Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K13
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    27   1.1  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   4.6  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   4.6  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   4.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.1  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   8.1  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   8.1  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   8.1  

>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 257 LEACLKDSDHLNFRKQFLCGRKSTSLKMKFQISFL 361
           LE+CL+D     FR++ +C +K    K  +QI+ L
Sbjct: 640 LESCLEDYLFPEFRRRVICPKKVFEEKCIYQITSL 674


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 203 LLSERKLFIFARMKTKCFLC 144
           LL+   + I  ++K KCFLC
Sbjct: 624 LLNGSSILILGKLKEKCFLC 643


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = -3

Query: 374 SISSAETKSGISSLDLY 324
           SI S+ TKS ISSLD+Y
Sbjct: 232 SIPSSITKSNISSLDVY 248


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 307 LVWTKKY-KSKDEIPDFVSAELIER 378
           +VW  KY   K+ IP F+S EL+++
Sbjct: 414 VVWKGKYFLDKELIPSFLSEELVDK 438


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 458 PNIAPRLARAVRSISTFDILILASLRDLSISSAE 357
           PN+ P++     SIS F+ LIL  LR L  SS E
Sbjct: 250 PNVLPQVLLLCPSISIFN-LILLHLRALIRSSPE 282


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 271 QRFRPSEFQKTILVWT 318
           Q+FR + F K +LVWT
Sbjct: 124 QQFRDANFCKLVLVWT 139


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 319 KKYKSKDEIPDFVSAELIERSRSEARIKISNV 414
           K+  S DE  D+V  + I  + SEA + I  V
Sbjct: 222 KRIVSDDESDDYVEPDHISEASSEASLPIDEV 253


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 325 YKSKDEIPDFVSAELIERSRSEARIKIS 408
           +K   E+P+FV   +++R      IK+S
Sbjct: 477 FKHTPEVPEFVQNRVLQRGDRHQSIKVS 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,973,066
Number of Sequences: 5004
Number of extensions: 38522
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)