Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K13
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470           32   0.28 
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734...    31   0.50 
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194...    29   2.6  
02_01_0680 + 5054306-5056411,5057200-5057243,5057549-5057664,505...    27   8.1  

>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
          Length = 675

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +2

Query: 260 EACLKDSDHLNFRKQFLCGRKSTSLKMKFQISFLLN*LKDLEVRQESKYQMCLCSSRLLL 439
           E C K    L   K  + G K  SLK++ ++      L+  EV +E + QM L  ++L L
Sbjct: 312 EVCTKLVRELEEHKAEIEGLKQDSLKLRAEVDEDRKLLQMAEVWREERVQMKLVDAKLTL 371

Query: 440 VLEQYSVGKLQ 472
             +   + KLQ
Sbjct: 372 EAKYEELSKLQ 382


>11_06_0667 +
           26071774-26072070,26072352-26073153,26073209-26073411,
           26075078-26075521,26075703-26075758,26076323-26076402,
           26077098-26077174,26077279-26078301
          Length = 993

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -2

Query: 465 FPTEYCSKTSKSREEHKHI*YFDSCLTSRSFN*FSRNEIWNFIFRLVLFRPHKNCFLKFR 286
           F TE+   T  S   HKHI     C T R +    +  IW +   +VL +P K   L F 
Sbjct: 192 FNTEH---TILSHIRHKHIIRLFGCCTERQYKRKIKLSIWCWKKEVVLLQPMKRLLLVFE 248

Query: 285 WSES 274
           + ++
Sbjct: 249 YMKN 252


>12_02_0959 +
           24818310-24818369,24818689-24819136,24819265-24819482,
           24819651-24819929
          Length = 334

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 143 STQYHYISSSV*GMYCHRLLKSILE 69
           S +Y+Y+S++  G  CHR +K I E
Sbjct: 272 SVKYYYLSNTTRGFNCHRWIKFIRE 296


>02_01_0680 +
           5054306-5056411,5057200-5057243,5057549-5057664,
           5057942-5058036
          Length = 786

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 382 RSEARIKISNVLMLLTALASLGAIFGGKA 468
           R + R+    V+ LLTA ASLGA+  G+A
Sbjct: 365 RHDLRVDNFTVVNLLTACASLGALQQGRA 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,091,438
Number of Sequences: 37544
Number of extensions: 227286
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)