Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K12
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 69 7e-13
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 2e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 40 4e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.006
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 33 0.031
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 33 0.042
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.073
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 31 0.13
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.29
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 30 0.29
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 30 0.29
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.51
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.51
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 0.89
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 28 1.2
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 28 1.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.6
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 2.1
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.1
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 2.1
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 27 2.7
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 2.7
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 27 2.7
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 27 2.7
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 3.6
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.6
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 26 3.6
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 26 3.6
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha... 26 4.8
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.3
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 68.5 bits (160), Expect = 7e-13
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMIDGRWCDVR--IPNGKGGP 422
FGE+L V RD TG S+GFGF+ F + + + H +DG+ D + IP +
Sbjct: 186 FGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEK 245
Query: 421 ASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFV------PRPFRAFSFVTFLDPEVA 260
+ K+FVG + E+ R++F +FG+V D + RP R F FVT+ +
Sbjct: 246 TA---KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRP-RGFGFVTYENESAV 301
Query: 259 RSLCGQDHI-IKGVSVNISTASPKRS 185
+ Q +I I G V + A+PK S
Sbjct: 302 EATMSQPYITIHGKPVEVKRATPKAS 327
Score = 46.4 bits (105), Expect = 3e-06
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP-----FRAFSFVTFLDPEVARSLCGQ 242
K+F+G + + LRDYF +FG+V D V R R F F+TF +P+ + +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 241 DHIIKGVSVNISTASPK 191
+H + G ++ A P+
Sbjct: 224 EHHLDGKIIDPKRAIPR 240
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.1 bits (77), Expect(2) = 2e-05
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = -1
Query: 418 SAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLDPEVARSLCGQ 242
+A+ VFVG ++ +S E+L+ F FG++ V +P P + FV F++ + A Q
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP-PGKGCGFVQFVNRQSAEIAINQ 357
Score = 28.3 bits (60), Expect(2) = 2e-05
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = -1
Query: 574 QVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMIDGRWC-DVRIPNGKGGPAS-AH 410
++ D +T +S+G+GF++F + Q AL + G+ C D I G P S AH
Sbjct: 217 KIMTDPQTNVSRGYGFVRFTDENDQKSALAE---MQGQICGDRPIRVGLATPKSKAH 270
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 39.5 bits (88), Expect = 4e-04
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 24/165 (14%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRR--HMIDGRWCDVRIPNGKGG- 425
+G ++ +V D ++G SKG+G++ F EA A+ IDGR ++ + N +
Sbjct: 286 YGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPAN 345
Query: 424 --PASAHR-------------KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP----- 305
P + R VFVG + + +DL F G + + +P
Sbjct: 346 PQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGR 405
Query: 304 FRAFSFVTFLDPEVARSLCGQD-HIIKGVSVNISTASPKRSAACR 173
+ F +VTF D + A+ + H I G + ++P+ R
Sbjct: 406 LKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPRTGGGSR 450
Score = 32.7 bits (71), Expect = 0.042
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRR-HMIDGRWC--DVRIPNGKGGP 422
G++ +++ D ++G KGFG++ F++ ++ + H I GR C D P GG
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR-TGGG 448
Query: 421 ASAHRKVFVGR 389
+ R F GR
Sbjct: 449 SRGGRGGFGGR 459
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 35.5 bits (78), Expect = 0.006
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 15/150 (10%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGA--------LGRRHMIDGRWCDVRIP 440
FG++L +V D G +KG+GF+ F E+ A L + + G R
Sbjct: 191 FGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRER 249
Query: 439 NGKGGPASAH-RKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPF----RAFSFVTFL 275
K A+ V++ ++ ++ D F +FG++T + + + R F FV +
Sbjct: 250 QSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYA 309
Query: 274 DPEVARSLCGQ--DHIIKGVSVNISTASPK 191
+ E A+ + D KG + + A K
Sbjct: 310 NHECAQKAVDELNDKEYKGKKLYVGRAQKK 339
Score = 29.9 bits (64), Expect = 0.29
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDVRIPNGKGGPA 419
G + ++V RD T S G+ ++ F E AL + +I GR C RI + P+
Sbjct: 104 GPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPC--RIMWSQRDPS 161
Query: 418 SAHR---KVFVGRCTEALSAEDLRDYFAEFGQV 329
VF+ A+ + L D F+ FG++
Sbjct: 162 LRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKI 194
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 33.1 bits (72), Expect = 0.031
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLDPEVARSL 251
++FVGR + ED+ D+F +GQ+ D + F FV D AR +
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDC---KLMNGFGFVEVEDARDARDI 53
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 32.7 bits (71), Expect = 0.042
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGAL 488
FGE + + + RD TG SKGF F+K+ + + + A+
Sbjct: 54 FGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAV 89
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.9 bits (69), Expect = 0.073
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Frame = -1
Query: 547 LSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDVRIPN-GKGGPASAHR---------K 404
LS GFGF++F + + + A+ + ++DG ++++ + G A + K
Sbjct: 663 LSMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTK 722
Query: 403 VFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPF----RAFSFVTFL 275
+ + + +D++ +GQ+ V VP+ F R F+F F+
Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFV 769
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 418 SAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVP 311
S +++F+ T + + +DL+ F FGQ+ V +P
Sbjct: 320 SETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMP 355
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 373 SAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLD 272
SAE+L F+ FG++ + +P P + + FL+
Sbjct: 518 SAEELTSLFSPFGELGRILIP-PAGTIAIIEFLN 550
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKF 518
FG+L V + D +T KGF +I F
Sbjct: 346 FGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 31.1 bits (67), Expect = 0.13
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = -1
Query: 433 KGGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPF---RAFSFV---TFLD 272
+ G R+++V ++ +D+ +F ++GQV V +P+ F + F +V T D
Sbjct: 749 RSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQD 808
Query: 271 PEVARSLCGQDHIIKGVSVNISTASPKRS 185
E A S G+ + +N+ + P+ S
Sbjct: 809 AENALSAAGKQ--LGNRVLNVVLSKPRES 835
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.9 bits (64), Expect = 0.29
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGA 491
FG +L + +G+SKG+GF+ F + EA + A
Sbjct: 407 FGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRA 441
Score = 28.3 bits (60), Expect = 0.89
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -1
Query: 403 VFVGRCTEALSAEDLRDYFAEFGQVTDVF 317
++VG LS E++ +F+++GQV +F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 29.9 bits (64), Expect = 0.29
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -1
Query: 415 AHRKVFVGRCTEALSAEDLRDYFAEFGQV 329
A R +++G ++L+ E L++ F EFG++
Sbjct: 412 ASRNIYIGNADDSLTIERLKEDFEEFGEI 440
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.29
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGAL 488
FG + V++ R+ T S+GFGF+ F+ E A+
Sbjct: 124 FGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAI 159
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 29.1 bits (62), Expect = 0.51
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = -1
Query: 403 VFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP-----FRAFSFVTFLDPE---VARSLC 248
+FVG + S E L+ +F GQV V +P + ++FV F++P+ ++++L
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 247 GQDHIIKGVSVNI 209
I K +NI
Sbjct: 154 FHHTIYKERKINI 166
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.1 bits (62), Expect = 0.51
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGR 482
FG + V + +D TG +KGF F+ + + + + A R
Sbjct: 225 FGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDR 262
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = -1
Query: 367 EDLRDYFAEFGQVTDVFVPRP-----FRAFSFVTFLDPEVA 260
E+LRD F FG + V++ + + F+FV++ D + A
Sbjct: 216 EELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCA 256
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKF 518
FG+LL Q+ +++ G SKGF F +F
Sbjct: 333 FGDLLSFQLIKNIADGSSKGFCFCEF 358
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = -1
Query: 409 RKVFVGRCTEALSAEDLRDYFAEFGQVT------DVFVPRPFRAFSFVTFLDPEV 263
+ V+VG +++ E+L+ +FA G V D F P + F+++ F +P +
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHP-KGFAYIEFSEPSL 108
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 403 VFVGRCTEALSAEDLRDYFAEFGQVTDVFVP 311
VFVG LS +DL+ F FG++ ++ +P
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIP 329
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 553 TGLSKGFGFIKFAEYEAQLGALGRRHMIDGRWCDVR 446
TGLS+ +GF++F+ + Q AL HM G C R
Sbjct: 220 TGLSRKYGFVRFSSEKEQQHAL--MHM-QGYLCQGR 252
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 409 RKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR 308
R VFV + L++ +L D+F + G V D + R
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVR 273
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMID--GRWCDVRIPNGK 431
FG++ V ++RD + SKGFG+I++ + AL + + D GR V + N K
Sbjct: 363 FGDIEFVHLQRDDQNR-SKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDV 320
+VFV + +++E LR +F FG+V D+
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDL 123
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHM 473
FG + + + D RTG KG+ I++A E A+ +++
Sbjct: 33 FGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNL 73
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = -1
Query: 418 SAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLD 272
+A R VF+G + +++ + F +FG++ + + + +FV FL+
Sbjct: 296 AASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSK-KNIAFVHFLN 343
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 301 GTVAVQTHLSLVQIQQSSHVGPLLTEPQYSVQQILCDVQTPVHPCHSECARH 456
G + + H +L I+ S++ T P Y Q+ + DV H + EC H
Sbjct: 962 GGIVLHVHRNLEHIK--SYLSEDQTRPTYKDQESIDDVYKRRHVWYRECRSH 1011
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -1
Query: 403 VFVGRCTEALSAEDLRDYFAEFGQV 329
V+V + E ++ ++LR YF FG++
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEI 202
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 592 GELLMV-QVKRDLRTGLSKGFGFIKFAEYEAQLGAL 488
G+L+ QV RD G SKG+GF+ + +E A+
Sbjct: 123 GQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAI 157
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.6 bits (56), Expect = 2.7
Identities = 8/30 (26%), Positives = 20/30 (66%)
Frame = -1
Query: 409 RKVFVGRCTEALSAEDLRDYFAEFGQVTDV 320
++++VG + ++ + DL F+ FG V+++
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFGSVSNL 34
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH 476
G++ V++ TG KGFGF+ F + + + A+ H
Sbjct: 252 GQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGH 290
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGA 491
+ L+ +V RD R G ++GFGF+ F + + L A
Sbjct: 53 YPSLVKTKVVRD-REGKTRGFGFVSFKDSDQFLKA 86
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -1
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR----PFRAFSFVTFLDPE 266
H ++FVG ++ E L F+E+ + V R R F FV+F D +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSD 81
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQL 497
FG++ + D+ T L KG+GF F E ++ L
Sbjct: 319 FGKVSSSKAIIDMETNLCKGYGFACFEEEKSAL 351
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVP 311
+VFVGR + + ++R F G V V +P
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIP 76
>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
Isp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 424 PASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVP 311
PA++ + + VG T D YF+ +G D+F P
Sbjct: 354 PAASKKAITVGAST----INDQMAYFSNYGSCVDIFAP 387
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 550 GLSKGFGFIKFAEYEAQLGAL 488
G SKGFGF++F ++ L AL
Sbjct: 536 GRSKGFGFMQFISHKYALMAL 556
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,553
Number of Sequences: 5004
Number of extensions: 54049
Number of successful extensions: 171
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -