Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K12
(595 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 94 6e-20
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 70 1e-12
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 70 1e-12
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 62 2e-10
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 62 2e-10
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 55 3e-08
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 55 3e-08
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 55 3e-08
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 55 3e-08
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 55 3e-08
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 47 1e-05
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 47 1e-05
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 47 1e-05
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 47 1e-05
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 47 1e-05
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 47 1e-05
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 44 6e-05
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 43 2e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 43 2e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 41 8e-04
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 40 0.001
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 40 0.001
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 40 0.001
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 38 0.004
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 38 0.004
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 38 0.004
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 38 0.007
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 38 0.007
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 37 0.009
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 37 0.009
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 35 0.038
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 35 0.038
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 35 0.038
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 35 0.038
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 33 0.12
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 33 0.12
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 33 0.15
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 33 0.15
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 33 0.20
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 32 0.27
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 32 0.27
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 32 0.27
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 32 0.27
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 31 0.47
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 31 0.47
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 31 0.47
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 30 1.4
U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical pr... 30 1.4
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 30 1.4
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 29 1.9
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 29 1.9
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 29 1.9
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 29 1.9
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 29 1.9
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 29 3.3
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 29 3.3
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 29 3.3
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z93377-4|CAB07578.2| 325|Caenorhabditis elegans Hypothetical pr... 27 7.6
AL021472-7|CAA16303.2| 283|Caenorhabditis elegans Hypothetical ... 27 7.6
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 27 7.6
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 27 7.6
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 27 7.6
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 27 7.6
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 27 7.6
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 27 7.6
AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical ... 27 7.6
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 94.3 bits (224), Expect = 6e-20
Identities = 57/145 (39%), Positives = 81/145 (55%), Gaps = 11/145 (7%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALG-RRHMIDGRWCDVRIPNG--KGGP 422
G ++ ++KR G SKGFGF++ + Q L +HMIDGR CDV++P+G K G
Sbjct: 197 GTVVFCEIKRK-SDGNSKGFGFVRMSSVGEQNKVLAIPQHMIDGRRCDVKVPDGRDKQGR 255
Query: 421 ASAHRKVFVGRCTEALSAEDLRDYFA-------EFGQVTDVFVPRPFRAFSFVTFLDPEV 263
S R +FVGR T+ + LR F E VTDVF+P+PFR F+FVT E
Sbjct: 256 PSISR-IFVGRLTDKVDEHQLRKVFGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEA 314
Query: 262 ARSLCGQDHI-IKGVSVNISTASPK 191
A + + + + G+SV +S A P+
Sbjct: 315 AERIVSKGSLTVNGLSVGLSIAQPR 339
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 70.1 bits (164), Expect = 1e-12
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRR-HMIDGRWCDVRIPNGKGGPA 419
FGE+ V RD T ++GFGFI F + + L R H +DG+ D ++ K A
Sbjct: 68 FGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQA 127
Query: 418 ---SAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFV-----PRPFRAFSFVTFLDPEV 263
+ +KVF+G + + ED++ YF +G+V D + + R F FVTF EV
Sbjct: 128 KLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEV 187
Query: 262 ARSLCG-QDHIIKGVSVNISTASPK 191
A +C H I G V A PK
Sbjct: 188 ADKVCEIHFHEINGKMVECKKAQPK 212
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP-----FRAFSFVTFLDP-EVARSLCG 245
K+F+G + +AE+LRDYF FG+V + V R R F F+TF+DP V + L
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 244 QDHIIKGVSVNISTASPKRSAA 179
++H + G ++ A PKR+ A
Sbjct: 106 REHELDGKKIDPKVAFPKRTQA 127
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 70.1 bits (164), Expect = 1e-12
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRR-HMIDGRWCDVRIPNGKGGPA 419
FGE+ V RD T ++GFGFI F + + L R H +DG+ D ++ K A
Sbjct: 68 FGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQA 127
Query: 418 ---SAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFV-----PRPFRAFSFVTFLDPEV 263
+ +KVF+G + + ED++ YF +G+V D + + R F FVTF EV
Sbjct: 128 KLVTKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEV 187
Query: 262 ARSLCG-QDHIIKGVSVNISTASPK 191
A +C H I G V A PK
Sbjct: 188 ADKVCEIHFHEINGKMVECKKAQPK 212
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP-----FRAFSFVTFLDP-EVARSLCG 245
K+F+G + +AE+LRDYF FG+V + V R R F F+TF+DP V + L
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 244 QDHIIKGVSVNISTASPKRSAA 179
++H + G ++ A PKR+ A
Sbjct: 106 REHELDGKKIDPKVAFPKRTQA 127
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 62.5 bits (145), Expect = 2e-10
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEA-QLGALGRRHMIDGRWCDVRIPNGKGGPA 419
+GE+ QVK D G S+GF F++F E +L R I G+ +V K +
Sbjct: 52 YGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEV-----KPAKS 106
Query: 418 SAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVP-----RPFRAFSFVTFLDPEVARS 254
++KVFVG S +DLR +F +FG+V D+ P + R F+F+ F + E A
Sbjct: 107 RENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADK 166
Query: 253 LCGQ 242
Q
Sbjct: 167 ASSQ 170
Score = 44.4 bits (100), Expect = 6e-05
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Frame = -1
Query: 472 IDGRWCDVRIPNGKGGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP---- 305
I+G + NG + +K+FVG + ++ EDL +F ++G+V V
Sbjct: 8 INGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNG 67
Query: 304 -FRAFSFVTFLDPEVAR-SLCGQDHIIKGVSVNISTASPKRSAACRVMGWALD 152
R F+FV F E + +L ++ IKG SV + A + + V G D
Sbjct: 68 RSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRENKKVFVGGLPSD 120
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 62.5 bits (145), Expect = 2e-10
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEA-QLGALGRRHMIDGRWCDVRIPNGKGGPA 419
+GE+ QVK D G S+GF F++F E +L R I G+ +V K +
Sbjct: 52 YGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEV-----KPAKS 106
Query: 418 SAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVP-----RPFRAFSFVTFLDPEVARS 254
++KVFVG S +DLR +F +FG+V D+ P + R F+F+ F + E A
Sbjct: 107 RENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADK 166
Query: 253 LCGQ 242
Q
Sbjct: 167 ASSQ 170
Score = 44.4 bits (100), Expect = 6e-05
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Frame = -1
Query: 472 IDGRWCDVRIPNGKGGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP---- 305
I+G + NG + +K+FVG + ++ EDL +F ++G+V V
Sbjct: 8 INGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNG 67
Query: 304 -FRAFSFVTFLDPEVAR-SLCGQDHIIKGVSVNISTASPKRSAACRVMGWALD 152
R F+FV F E + +L ++ IKG SV + A + + V G D
Sbjct: 68 RSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRENKKVFVGGLPSD 120
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 55.2 bits (127), Expect = 3e-08
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFA-EYEAQLGALGRRHMIDGRWCDVR--IPNGKGG 425
FGE+ + V RD T S+GFGF+ F+ + E R H+IDG+ D + +P
Sbjct: 46 FGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKN 105
Query: 424 PASAH---RKVFVGRCTEALSAEDLRDYFAEFGQVT------DVFVPRPFRAFSFVTFLD 272
+ ++ ++++V E + + L +YF ++G VT D +P R F FVTF D
Sbjct: 106 RSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP-RGFGFVTFDD 164
Query: 271 PE-VARSLCGQDHIIKG 224
+ V + + + H++ G
Sbjct: 165 HDSVDQCVLQKSHMVNG 181
Score = 50.0 bits (114), Expect = 1e-06
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Frame = -1
Query: 454 DVRIPNGKGGPASAH---RKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP-----FR 299
+++ NG G + RK+FVG T + + +R+++++FG++TD+ V R R
Sbjct: 5 EIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSR 64
Query: 298 AFSFVTFL-DPEVARSLCGQDHIIKGVSVNISTASPK 191
F FVTF EV ++ + HII G +V+ A P+
Sbjct: 65 GFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPR 101
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEA-QLGALGRRHMIDGRWCDVR 446
+G + ++ D T +GFGF+ F ++++ L + HM++G CDVR
Sbjct: 137 YGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVR 187
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 55.2 bits (127), Expect = 3e-08
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFA-EYEAQLGALGRRHMIDGRWCDVR--IPNGKGG 425
FGE+ + V RD T S+GFGF+ F+ + E R H+IDG+ D + +P
Sbjct: 8 FGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKN 67
Query: 424 PASAH---RKVFVGRCTEALSAEDLRDYFAEFGQVT------DVFVPRPFRAFSFVTFLD 272
+ ++ ++++V E + + L +YF ++G VT D +P R F FVTF D
Sbjct: 68 RSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP-RGFGFVTFDD 126
Query: 271 PE-VARSLCGQDHIIKG 224
+ V + + + H++ G
Sbjct: 127 HDSVDQCVLQKSHMVNG 143
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Frame = -1
Query: 361 LRDYFAEFGQVTDVFVPRP-----FRAFSFVTFL-DPEVARSLCGQDHIIKGVSVNISTA 200
+R+++++FG++TD+ V R R F FVTF EV ++ + HII G +V+ A
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 199 SPK 191
P+
Sbjct: 61 VPR 63
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEA-QLGALGRRHMIDGRWCDVR 446
+G + ++ D T +GFGF+ F ++++ L + HM++G CDVR
Sbjct: 99 YGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVR 149
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 55.2 bits (127), Expect = 3e-08
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFA-EYEAQLGALGRRHMIDGRWCDVR--IPNGKGG 425
FGE+ + V RD T S+GFGF+ F+ + E R H+IDG+ D + +P
Sbjct: 8 FGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKN 67
Query: 424 PASAH---RKVFVGRCTEALSAEDLRDYFAEFGQVT------DVFVPRPFRAFSFVTFLD 272
+ ++ ++++V E + + L +YF ++G VT D +P R F FVTF D
Sbjct: 68 RSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP-RGFGFVTFDD 126
Query: 271 PE-VARSLCGQDHIIKG 224
+ V + + + H++ G
Sbjct: 127 HDSVDQCVLQKSHMVNG 143
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Frame = -1
Query: 361 LRDYFAEFGQVTDVFVPRP-----FRAFSFVTFL-DPEVARSLCGQDHIIKGVSVNISTA 200
+R+++++FG++TD+ V R R F FVTF EV ++ + HII G +V+ A
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRA 60
Query: 199 SPK 191
P+
Sbjct: 61 VPR 63
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEA-QLGALGRRHMIDGRWCDVR 446
+G + ++ D T +GFGF+ F ++++ L + HM++G CDVR
Sbjct: 99 YGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVR 149
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 55.2 bits (127), Expect = 3e-08
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFA-EYEAQLGALGRRHMIDGRWCDVR--IPNGKGG 425
FGE+ + V RD T S+GFGF+ F+ + E R H+IDG+ D + +P
Sbjct: 46 FGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKN 105
Query: 424 PASAH---RKVFVGRCTEALSAEDLRDYFAEFGQVT------DVFVPRPFRAFSFVTFLD 272
+ ++ ++++V E + + L +YF ++G VT D +P R F FVTF D
Sbjct: 106 RSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP-RGFGFVTFDD 164
Query: 271 PE-VARSLCGQDHIIKG 224
+ V + + + H++ G
Sbjct: 165 HDSVDQCVLQKSHMVNG 181
Score = 50.0 bits (114), Expect = 1e-06
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Frame = -1
Query: 454 DVRIPNGKGGPASAH---RKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP-----FR 299
+++ NG G + RK+FVG T + + +R+++++FG++TD+ V R R
Sbjct: 5 EIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSR 64
Query: 298 AFSFVTFL-DPEVARSLCGQDHIIKGVSVNISTASPK 191
F FVTF EV ++ + HII G +V+ A P+
Sbjct: 65 GFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPR 101
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEA-QLGALGRRHMIDGRWCDVR 446
+G + ++ D T +GFGF+ F ++++ L + HM++G CDVR
Sbjct: 137 YGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVR 187
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 55.2 bits (127), Expect = 3e-08
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFA-EYEAQLGALGRRHMIDGRWCDVR--IPNGKGG 425
FGE+ + V RD T S+GFGF+ F+ + E R H+IDG+ D + +P
Sbjct: 46 FGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKN 105
Query: 424 PASAH---RKVFVGRCTEALSAEDLRDYFAEFGQVT------DVFVPRPFRAFSFVTFLD 272
+ ++ ++++V E + + L +YF ++G VT D +P R F FVTF D
Sbjct: 106 RSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP-RGFGFVTFDD 164
Query: 271 PE-VARSLCGQDHIIKG 224
+ V + + + H++ G
Sbjct: 165 HDSVDQCVLQKSHMVNG 181
Score = 50.0 bits (114), Expect = 1e-06
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Frame = -1
Query: 454 DVRIPNGKGGPASAH---RKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP-----FR 299
+++ NG G + RK+FVG T + + +R+++++FG++TD+ V R R
Sbjct: 5 EIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSR 64
Query: 298 AFSFVTFL-DPEVARSLCGQDHIIKGVSVNISTASPK 191
F FVTF EV ++ + HII G +V+ A P+
Sbjct: 65 GFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPR 101
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEA-QLGALGRRHMIDGRWCDVR 446
+G + ++ D T +GFGF+ F ++++ L + HM++G CDVR
Sbjct: 137 YGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCDVR 187
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH---MIDGRWCDVRIPNGKGG 425
+G + + RD T SKG F+ F + + A G H +I+G V++
Sbjct: 78 YGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTE 137
Query: 424 PASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR----PFRAFSFVTFLDPEVA 260
+ RK+F+G+ ++ + E+LR+ FA+FG + D V R R +FVTF + A
Sbjct: 138 NRN-ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDVRIPNGKGGP 422
FG +L +V D T LSK FGF+ + ++ A+ + I + V++ +G P
Sbjct: 522 FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNP 581
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH---MIDGRWCDVRIPNGKGG 425
+G + + RD T SKG F+ F + + A G H +I+G V++
Sbjct: 78 YGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTE 137
Query: 424 PASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR----PFRAFSFVTFLDPEVA 260
+ RK+F+G+ ++ + E+LR+ FA+FG + D V R R +FVTF + A
Sbjct: 138 NRN-ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDVRIPNGKGGP 422
FG +L +V D T LSK FGF+ + ++ A+ + I + V++ +G P
Sbjct: 522 FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNP 581
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH---MIDGRWCDVRIPNGKGG 425
+G + + RD T SKG F+ F + + A G H +I+G V++
Sbjct: 78 YGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTE 137
Query: 424 PASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR----PFRAFSFVTFLDPEVA 260
+ RK+F+G+ ++ + E+LR+ FA+FG + D V R R +FVTF + A
Sbjct: 138 NRN-ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDVRIPNGKGGP 422
FG +L +V D T LSK FGF+ + ++ A+ + I + V++ +G P
Sbjct: 451 FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNP 510
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH---MIDGRWCDVRIPNGKGG 425
+G + + RD T SKG F+ F + + A G H +I+G V++
Sbjct: 78 YGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTE 137
Query: 424 PASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR----PFRAFSFVTFLDPEVA 260
+ RK+F+G+ ++ + E+LR+ FA+FG + D V R R +FVTF + A
Sbjct: 138 NRN-ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH---MIDGRWCDVRIPNGKGG 425
+G + + RD T SKG F+ F + + A G H +I+G V++
Sbjct: 78 YGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTE 137
Query: 424 PASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR----PFRAFSFVTFLDPEVA 260
+ RK+F+G+ ++ + E+LR+ FA+FG + D V R R +FVTF + A
Sbjct: 138 NRN-ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH---MIDGRWCDVRIPNGKGG 425
+G + + RD T SKG F+ F + + A G H +I+G V++
Sbjct: 78 YGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTE 137
Query: 424 PASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR----PFRAFSFVTFLDPEVA 260
+ RK+F+G+ ++ + E+LR+ FA+FG + D V R R +FVTF + A
Sbjct: 138 NRN-ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCA 195
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDVRIPNGKGGP 422
FG +L +V D T LSK FGF+ + ++ A+ + I + V++ +G P
Sbjct: 522 FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNP 581
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 44.4 bits (100), Expect = 6e-05
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH---MIDGRWCDVRIPNGKGG 425
+G + + RD T SKG F+ F + + A G H +I+G V++
Sbjct: 78 YGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADTE 137
Query: 424 PASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR 308
+ RK+F+G+ ++ + E+LR+ FA+FG + D V R
Sbjct: 138 NRN-ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLR 175
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 42.7 bits (96), Expect = 2e-04
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDV-----RIPN 437
FG +L +V D G SKG+GF+ F EA A+ + + ++ G+ V R
Sbjct: 143 FGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQR 201
Query: 436 GK--GGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTD---VFVPRPFRAFSFVTFLD 272
+ G A V+V + + E L FA+FG +T + V + F FV F +
Sbjct: 202 NRELGETAKQFTNVYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFAN 261
Query: 271 PEVARSLCG--QDHIIKGVSVNISTASPKRSA 182
PE A + D I+G + + ++ +
Sbjct: 262 PEEAETAVQALHDSTIEGTDLKLHVCRAQKKS 293
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 42.7 bits (96), Expect = 2e-04
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDV-----RIPN 437
FG +L +V D G SKG+GF+ F EA A+ + + ++ G+ V R
Sbjct: 80 FGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQR 138
Query: 436 GK--GGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTD---VFVPRPFRAFSFVTFLD 272
+ G A V+V + + E L FA+FG +T + V + F FV F +
Sbjct: 139 NRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFAN 198
Query: 271 PEVARSLCG--QDHIIKGVSVNISTASPKRSA 182
PE A + D I+G + + ++ +
Sbjct: 199 PEEAETAVQALHDSTIEGTDLKLHVCRAQKKS 230
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 42.7 bits (96), Expect = 2e-04
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDV-----RIPN 437
FG +L +V D G SKG+GF+ F EA A+ + + ++ G+ V R
Sbjct: 143 FGNILSCKVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQR 201
Query: 436 GK--GGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTD---VFVPRPFRAFSFVTFLD 272
+ G A V+V + + E L FA+FG +T + V + F FV F +
Sbjct: 202 NRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFAN 261
Query: 271 PEVARSLCG--QDHIIKGVSVNISTASPKRSA 182
PE A + D I+G + + ++ +
Sbjct: 262 PEEAETAVQALHDSTIEGTDLKLHVCRAQKKS 293
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 40.7 bits (91), Expect = 8e-04
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 19/157 (12%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKF-AEYEAQLGALGRRHMIDGRWCDVRIPNGKGGPA 419
FG +L +V D G SKG+GF+ F E+ AQ M+ D ++ GK P
Sbjct: 168 FGNILSCKVATD-DEGNSKGYGFVHFETEHSAQTAIEKVNGML---LSDKKVYVGKFQPR 223
Query: 418 SAHRK-----------VFVGRCTEALSAEDLRDYFAEFGQVTDVFV-----PRPFRAFSF 287
+ K VFV E L E L F++FG++T V +P + F F
Sbjct: 224 AQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKP-KGFGF 282
Query: 286 VTFLDPEVARSLCGQ--DHIIKGVSVNISTASPKRSA 182
V F D + A + D I++G +S ++ +
Sbjct: 283 VAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKS 319
Score = 37.9 bits (84), Expect = 0.005
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDVRIPNG-KGG 425
FGE+ V D + G KGFGF+ FA+ +A A+ + + +++G C + + K
Sbjct: 261 FGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKS 319
Query: 424 PASAHRK------------------VFVGRCTEALSAEDLRDYFAEFGQVTD--VFVPRP 305
SA K ++V E L+ + LRD+F+ FG +T V V
Sbjct: 320 ERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN 379
Query: 304 FRA--FSFVTFLDPEVA 260
R+ F FV F PE A
Sbjct: 380 GRSKGFGFVCFEKPEEA 396
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 40.7 bits (91), Expect = 8e-04
Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 19/157 (12%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKF-AEYEAQLGALGRRHMIDGRWCDVRIPNGKGGPA 419
FG +L +V D G SKG+GF+ F E+ AQ M+ D ++ GK P
Sbjct: 168 FGNILSCKVATD-DEGNSKGYGFVHFETEHSAQTAIEKVNGML---LSDKKVYVGKFQPR 223
Query: 418 SAHRK-----------VFVGRCTEALSAEDLRDYFAEFGQVTDVFV-----PRPFRAFSF 287
+ K VFV E L E L F++FG++T V +P + F F
Sbjct: 224 AQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKP-KGFGF 282
Query: 286 VTFLDPEVARSLCGQ--DHIIKGVSVNISTASPKRSA 182
V F D + A + D I++G +S ++ +
Sbjct: 283 VAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKS 319
Score = 37.9 bits (84), Expect = 0.005
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDVRIPNG-KGG 425
FGE+ V D + G KGFGF+ FA+ +A A+ + + +++G C + + K
Sbjct: 261 FGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKS 319
Query: 424 PASAHRK------------------VFVGRCTEALSAEDLRDYFAEFGQVTD--VFVPRP 305
SA K ++V E L+ + LRD+F+ FG +T V V
Sbjct: 320 ERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN 379
Query: 304 FRA--FSFVTFLDPEVA 260
R+ F FV F PE A
Sbjct: 380 GRSKGFGFVCFEKPEEA 396
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 39.9 bits (89), Expect = 0.001
Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAE-YEAQLGALGRRHMIDGRWCDVR--IPNG--- 434
+G ++ V RD T S+GFGF+ FA + A+ R H + G+ D + IP
Sbjct: 72 WGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPREQMS 131
Query: 433 --------KGGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTF 278
+ PA + + G S + LR YF FG + V + R FV +
Sbjct: 132 SMIPPPFFETDPAPGCKLLLNGITNGVHSVDSLRVYFETFGTLDQVEILGQPRGLGFVIY 191
Query: 277 LDPEVA-RSLCGQD--HII--KGVSVNISTASPKRS 185
D E A R L HI+ + + V + T P S
Sbjct: 192 EDKESADRCLAHNSGRHIVNERKIEVRVFTKHPNGS 227
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = -1
Query: 409 RKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP-----FRAFSFVTFLDPEVARS-LC 248
RK+F+G + + E L +YF+++G V D V R R F FVTF A S +
Sbjct: 49 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 108
Query: 247 GQDHIIKGVSVNISTASPKRSAACRV 170
+ H + G +V+ A P+ + +
Sbjct: 109 DRPHKLGGKTVDSKRAIPREQMSSMI 134
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 39.9 bits (89), Expect = 0.001
Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAE-YEAQLGALGRRHMIDGRWCDVR--IPNG--- 434
+G ++ V RD T S+GFGF+ FA + A+ R H + G+ D + IP
Sbjct: 92 WGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPREQMS 151
Query: 433 --------KGGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTF 278
+ PA + + G S + LR YF FG + V + R FV +
Sbjct: 152 SMIPPPFFETDPAPGCKLLLNGITNGVHSVDSLRVYFETFGTLDQVEILGQPRGLGFVIY 211
Query: 277 LDPEVA-RSLCGQD--HII--KGVSVNISTASPKRS 185
D E A R L HI+ + + V + T P S
Sbjct: 212 EDKESADRCLAHNSGRHIVNERKIEVRVFTKHPNGS 247
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = -1
Query: 409 RKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP-----FRAFSFVTFLDPEVARS-LC 248
RK+F+G + + E L +YF+++G V D V R R F FVTF A S +
Sbjct: 69 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 128
Query: 247 GQDHIIKGVSVNISTASPKRSAACRV 170
+ H + G +V+ A P+ + +
Sbjct: 129 DRPHKLGGKTVDSKRAIPREQMSSMI 154
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 39.9 bits (89), Expect = 0.001
Identities = 44/156 (28%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAE-YEAQLGALGRRHMIDGRWCDVR--IPNG--- 434
+G ++ V RD T S+GFGF+ FA + A+ R H + G+ D + IP
Sbjct: 93 WGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMNDRPHKLGGKTVDSKRAIPREQMS 152
Query: 433 --------KGGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTF 278
+ PA + + G S + LR YF FG + V + R FV +
Sbjct: 153 SMIPPPFFETDPAPGCKLLLNGITNGVHSVDSLRVYFETFGTLDQVEILGQPRGLGFVIY 212
Query: 277 LDPEVA-RSLCGQD--HII--KGVSVNISTASPKRS 185
D E A R L HI+ + + V + T P S
Sbjct: 213 EDKESADRCLAHNSGRHIVNERKIEVRVFTKHPNGS 248
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = -1
Query: 409 RKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP-----FRAFSFVTFLDPEVARS-LC 248
RK+F+G + + E L +YF+++G V D V R R F FVTF A S +
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 129
Query: 247 GQDHIIKGVSVNISTASPKRSAACRV 170
+ H + G +V+ A P+ + +
Sbjct: 130 DRPHKLGGKTVDSKRAIPREQMSSMI 155
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 38.3 bits (85), Expect = 0.004
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 25/189 (13%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGA--------LGRRHMIDGRWCDVRIP 440
FG++ +V RD T SKG+GF+ + + E A LGRR I W R P
Sbjct: 45 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRR-TIRTNWA-TRKP 102
Query: 439 NGKGGPASAHRK---------------VFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP 305
+ P+ + K V+VG +L+ +++R FA FG++T+V + +
Sbjct: 103 GDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFK- 160
Query: 304 FRAFSFVTFLDPEVARSLCGQ--DHIIKGVSVNISTASPKRSAACRVMGWALDATHGPLG 131
+ ++FV F + + A Q + + G V S + + + G
Sbjct: 161 MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGYGYGNSSSG 220
Query: 130 LSNKPYLGY 104
+++PY GY
Sbjct: 221 GNSQPYSGY 229
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR 308
H VFVG + + + LR+ F FG V+D V R
Sbjct: 21 HFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIR 55
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 38.3 bits (85), Expect = 0.004
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 25/189 (13%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGA--------LGRRHMIDGRWCDVRIP 440
FG++ +V RD T SKG+GF+ + + E A LGRR I W R P
Sbjct: 55 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRR-TIRTNWA-TRKP 112
Query: 439 NGKGGPASAHRK---------------VFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP 305
+ P+ + K V+VG +L+ +++R FA FG++T+V + +
Sbjct: 113 GDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFK- 170
Query: 304 FRAFSFVTFLDPEVARSLCGQ--DHIIKGVSVNISTASPKRSAACRVMGWALDATHGPLG 131
+ ++FV F + + A Q + + G V S + + + G
Sbjct: 171 MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGYGYGNSSSG 230
Query: 130 LSNKPYLGY 104
+++PY GY
Sbjct: 231 GNSQPYSGY 239
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR 308
H VFVG + + + LR+ F FG V+D V R
Sbjct: 31 HFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIR 65
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 38.3 bits (85), Expect = 0.004
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 25/189 (13%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGA--------LGRRHMIDGRWCDVRIP 440
FG++ +V RD T SKG+GF+ + + E A LGRR I W R P
Sbjct: 158 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRR-TIRTNWA-TRKP 215
Query: 439 NGKGGPASAHRK---------------VFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP 305
+ P+ + K V+VG +L+ +++R FA FG++T+V + +
Sbjct: 216 GDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFK- 273
Query: 304 FRAFSFVTFLDPEVARSLCGQ--DHIIKGVSVNISTASPKRSAACRVMGWALDATHGPLG 131
+ ++FV F + + A Q + + G V S + + + G
Sbjct: 274 MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGYGYGNSSSG 333
Query: 130 LSNKPYLGY 104
+++PY GY
Sbjct: 334 GNSQPYSGY 342
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR 308
H VFVG + + + LR+ F FG V+D V R
Sbjct: 134 HFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIR 168
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 38.3 bits (85), Expect = 0.004
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 25/189 (13%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGA--------LGRRHMIDGRWCDVRIP 440
FG++ +V RD T SKG+GF+ + + E A LGRR I W R P
Sbjct: 126 FGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRR-TIRTNWA-TRKP 183
Query: 439 NGKGGPASAHRK---------------VFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRP 305
+ P+ + K V+VG +L+ +++R FA FG++T+V + +
Sbjct: 184 GDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEIRQGFASFGRITEVRIFK- 241
Query: 304 FRAFSFVTFLDPEVARSLCGQ--DHIIKGVSVNISTASPKRSAACRVMGWALDATHGPLG 131
+ ++FV F + + A Q + + G V S + + + G
Sbjct: 242 MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGSYGYGYGNSSSG 301
Query: 130 LSNKPYLGY 104
+++PY GY
Sbjct: 302 GNSQPYSGY 310
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR 308
H VFVG + + + LR+ F FG V+D V R
Sbjct: 102 HFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIR 136
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 37.5 bits (83), Expect = 0.007
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYE----AQLGALGR---RHMIDGRWC------ 455
FGE+ +V RD++T SKG+GF+ F + A G G+ + + W
Sbjct: 158 FGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSE 217
Query: 454 ----DVRIPNGKGGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSF 287
+ + + V+VG ++ + DLRD F+ +G + +V + + R ++F
Sbjct: 218 ENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQR-YAF 276
Query: 286 VTFLDPEVA 260
V + E A
Sbjct: 277 VRYEKKECA 285
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = -1
Query: 418 SAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPF-----RAFSFVTFLDPEVARS 254
S H VFVG ++ +S E L+ F +FG+V++ V R + + FV+F + + A +
Sbjct: 132 SKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAEN 191
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -1
Query: 595 FGELLMV-QVKRDLRTGLSKGFGFIKFAEYEAQLGAL 488
FG +L V ++ RD+ +G SKGF FI FA +EA AL
Sbjct: 123 FGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Score = 30.7 bits (66), Expect = 0.82
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMID--GRWCDVRIPNGKGGPA 419
G ++ V + +D T +GFGF++F E A+ +MI G+ V +
Sbjct: 37 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNM 96
Query: 418 SAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDV 320
+FVG + + L D F+ FG + V
Sbjct: 97 DVGANIFVGNLDPEVDEKLLYDTFSAFGVILQV 129
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = -1
Query: 595 FGELLMV-QVKRDLRTGLSKGFGFIKFAEYEAQLGAL 488
FG +L V ++ RD+ +G SKGF FI FA +EA AL
Sbjct: 133 FGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 169
Score = 30.7 bits (66), Expect = 0.82
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMID--GRWCDVRIPNGKGGPA 419
G ++ V + +D T +GFGF++F E A+ +MI G+ V +
Sbjct: 47 GPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNM 106
Query: 418 SAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDV 320
+FVG + + L D F+ FG + V
Sbjct: 107 DVGANIFVGNLDPEVDEKLLYDTFSAFGVILQV 139
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 37.1 bits (82), Expect = 0.009
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH---MIDG--RWCDVRIPNGK 431
FG++ + +D TG+ KG F+ + ++ + H + G R V+ +
Sbjct: 52 FGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLPGMNRAMQVKPADTD 111
Query: 430 GGPASAH-----RKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR 308
PAS +K+F+G ++ S +++R FA FG++ +V V R
Sbjct: 112 SRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLR 157
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQV 329
K+FVG+ L +DLR F +FG++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKI 55
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 37.1 bits (82), Expect = 0.009
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH---MIDG--RWCDVRIPNGK 431
FG++ + +D TG+ KG F+ + ++ + H + G R V+ +
Sbjct: 52 FGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLPGMNRAMQVKPADTD 111
Query: 430 GGPASAH-----RKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR 308
PAS +K+F+G ++ S +++R FA FG++ +V V R
Sbjct: 112 SRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLR 157
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQV 329
K+FVG+ L +DLR F +FG++
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKI 55
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 35.1 bits (77), Expect = 0.038
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLD 272
++++GR T +S +D+ +F +GQ+ DV + F FV F D
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK---NGFGFVEFDD 45
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 35.1 bits (77), Expect = 0.038
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLD 272
++++GR T +S +D+ +F +GQ+ DV + F FV F D
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK---NGFGFVEFDD 45
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 35.1 bits (77), Expect = 0.038
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLD 272
++++GR T +S +D+ +F +GQ+ DV + F FV F D
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK---NGFGFVEFDD 45
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 35.1 bits (77), Expect = 0.038
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFV-----PRPFRAFSFVTFLDPEVARSLCGQ 242
K+FVG S + L +YF +FG + + V + R + FVT D A C
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95
Query: 241 DH-IIKGVSVNISTA 200
+ II G N++ A
Sbjct: 96 PNPIIDGRKANVNLA 110
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 426 PPLPFGMRTSHQRPSIMCRRPSAPSWASYSANFMKPNPFERPVRRSR 566
P G++TS Q PS +RPS A S+N + P P P + +
Sbjct: 1467 PDQTTGLKTSQQPPSFAAKRPSFGRQAQSSSNVIPPAPAPTPTSQQK 1513
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 33.5 bits (73), Expect = 0.12
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 426 PPLPFGMRTSHQRPSIMCRRPSAPSWASYSANFMKPNPFERPVRRSR 566
P G++TS Q PS +RPS A S+N + P P P + +
Sbjct: 1467 PDQTTGLKTSQQPPSFAAKRPSFGRQAQSSSNVIPPAPAPTPTSQQK 1513
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRR--HMIDGR 461
+G++ V + RD + SKGFGF++F E AL R ++DGR
Sbjct: 42 YGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGR 88
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRR--HMIDGR 461
+G++ V + RD + SKGFGF++F E AL R ++DGR
Sbjct: 42 YGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGR 88
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 32.7 bits (71), Expect = 0.20
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLD----PEVARSLCGQD 239
KV+VG ++++L + F FG++ V+V R F+FV + D + R+L G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 238 HIIKGVSVNISTASPKRSAACRVMGWALDATHGPLGLSNKPYLG 107
V +ST +R R G+ G G PY G
Sbjct: 64 ICGVRARVELSTGQ-RRGGGGRGGGF---GGRGGGGRDRSPYRG 103
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 32.3 bits (70), Expect = 0.27
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Frame = -1
Query: 442 PNGKGGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDV---FVPRPFRAFSFVTFLD 272
P+ GP +++ V DL+ F +FG V+DV F R + F FVT
Sbjct: 143 PSTSSGP-DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMER 201
Query: 271 PEVARSLCGQDH--IIKGVSVNISTASPK-RSAACRVMGWALD 152
P+ A + H +I+G + ++ A+ + S + G LD
Sbjct: 202 PQDAERARQELHGSMIEGRKIEVNCATARVHSKKVKPTGGILD 244
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLD 272
KV+VG ++++L + F FG++ V+V R F+FV + D
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDD 48
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 406 KVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLD 272
KV+VG ++++L + F FG++ V+V R F+FV + D
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDD 48
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 32.3 bits (70), Expect = 0.27
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Frame = -1
Query: 442 PNGKGGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDV---FVPRPFRAFSFVTFLD 272
P+ GP +++ V DL+ F +FG V+DV F R + F FVT
Sbjct: 143 PSTSSGP-DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMER 201
Query: 271 PEVARSLCGQDH--IIKGVSVNISTASPK-RSAACRVMGWALD 152
P+ A + H +I+G + ++ A+ + S + G LD
Sbjct: 202 PQDAERARQELHGSMIEGRKIEVNCATARVHSKKVKPTGGILD 244
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGA 491
+GE+ VQV D +TG KGF ++F EA + A
Sbjct: 302 YGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAA 336
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -1
Query: 388 CTEALSAEDLRDYFAEFGQVTDVFVPRP----FRAFSFVTFLD 272
CTE + LR +F ++GQ++D + FR F+FV FLD
Sbjct: 14 CTE----QQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLD 52
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 31.5 bits (68), Expect = 0.47
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKF 518
FG+++ ++ D TGLSKG GF++F
Sbjct: 151 FGQIITSRILSDNVTGLSKGVGFVRF 176
Score = 31.1 bits (67), Expect = 0.62
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMIDGRWCDVRIPNGK-GGPAS 416
GE+ ++ RD TG S G+GF+ + E L A+ + + + +++ +
Sbjct: 66 GEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQI 125
Query: 415 AHRKVFVGRCTEALSAEDLRDYFAEFGQV 329
++V ++++ +L F FGQ+
Sbjct: 126 KGSNLYVSGIPKSMTLHELESIFRPFGQI 154
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 31.5 bits (68), Expect = 0.47
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGAL---GRRHMIDGR----WC-DVRIP 440
F ++ V + + GL+ + F++F+++ AL R +++ W + R P
Sbjct: 60 FNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAFEPREP 119
Query: 439 --NGKGGPASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPR 308
N S H VFVG + + LR+ F +FG+V++ + R
Sbjct: 120 GENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIR 165
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYE 506
FGE+ ++ RD T KG+GF+ + E
Sbjct: 155 FGEVSEAKIIRDNNTNKGKGYGFVSYPRRE 184
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMIDGRWCDVRIPNGKGG 425
G +L +++ D TG KG+GFI+F + + A+ + + +R+ + GG
Sbjct: 42 GNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVDSAAGG 97
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = -1
Query: 367 EDLRDYFAEFGQVT--DVFVPRP---FRAFSFVTF---LDPEVAR-SLCGQDHIIKGVSV 215
+DLRD F EFG++ D+ RP R F F+ F D AR LC D + G +
Sbjct: 90 KDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCNTD--LDGHKI 147
Query: 214 NISTASPKR 188
+ + KR
Sbjct: 148 RVDFSLTKR 156
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRR-HMIDGRWCDV 449
+G + V + D TGL +GF I F + A+ +R H+IDG DV
Sbjct: 48 YGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIEQRPHVIDGDRVDV 97
>U23484-7|ABB88232.1| 738|Caenorhabditis elegans Hypothetical
protein EEED8.10a protein.
Length = 738
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = -1
Query: 409 RKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLDPEVARSLCG 245
RK+ V + ++ L+ +F+++G++T +PR + S L P+ +R+ CG
Sbjct: 112 RKIVVSNISAKVTQSQLQSFFSQYGKITSCILPREEKKTSVFGTL-PKHSRN-CG 164
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGAL 488
+GE++ + + RD TG SKGF F+ + + + + A+
Sbjct: 61 YGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAV 96
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKF 518
FG+++ + + D +G +GFGF++F
Sbjct: 34 FGDVVAISIPMDYESGKHRGFGFVEF 59
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Frame = -1
Query: 424 PASAHRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPF-----RAFSFVTF-LDPEV 263
P + R ++VG TE ++ + L F FG V + +P + R F FV F + +
Sbjct: 6 PHNRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDA 65
Query: 262 ARSLCGQDHI-IKGVSVNISTASPKRS 185
A ++ + + G ++ ++ A P ++
Sbjct: 66 AMAIDNMNESELFGKTIRVNFARPPKA 92
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQV 329
HR VF+G ++AE++ F+EFG V
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVV 345
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQV 329
HR VF+G ++AE++ F+EFG V
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVV 345
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -1
Query: 574 QVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMIDGRW 458
+V R+ RT SKG+GF+ F + E + A+ R M DG++
Sbjct: 233 KVVRESRTNKSKGYGFVSFRDSEDYVRAM--REM-DGKY 268
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQV 329
HR VF+G ++AE++ F+EFG V
Sbjct: 104 HRTVFLGGLPRIVTAEEIAQMFSEFGVV 131
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQV 329
HR VF+G ++AE++ F+EFG V
Sbjct: 318 HRTVFLGGLPRIVTAEEIAQMFSEFGVV 345
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -1
Query: 403 VFVGRCTEALSAEDLRDYFAEFGQVTDVFV------PRPFRAFSFVTFLDPEVARSLCGQ 242
V+VG + +DL +YF++ G V++V + RP R F+FV F + A+ Q
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRP-RGFAFVEFTEEAAAQRAVDQ 64
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKF 518
G ++ + + RD TGL KGF F+ F
Sbjct: 200 GRVIRIFIARDKVTGLPKGFAFVTF 224
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Frame = -1
Query: 382 EALSAEDLRDYFAEFGQVTDVFVPRPF-----RAFSFVTF 278
+ ++ ++LRD F + G+V +F+ R + F+FVTF
Sbjct: 185 QEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKF 518
FG +L ++V R+ RTG KG+ ++ F
Sbjct: 55 FGNVLRIRVARNRRTGNHKGWAYVGF 80
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRH--MIDGRWCDVRIPNGKGGP 422
FG +L +V D T LSK FGF+ + ++ A+ + I + V++ +G P
Sbjct: 358 FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNP 417
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 427 GPASAHRKVFVGRCTEALSAEDLRDYFAEFGQV 329
GP RKVFVG + D+ ++F+ +G++
Sbjct: 82 GPEVYSRKVFVGGLPSCVKESDILNFFSRYGRL 114
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAE 512
G++ V++ D TG +GF FI+FAE
Sbjct: 29 GQINNVRIVCDRETGRPRGFAFIEFAE 55
>Z93377-4|CAB07578.2| 325|Caenorhabditis elegans Hypothetical
protein F13A7.8 protein.
Length = 325
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 411 IAKYLLDAVLRLCQQRTYVTTLLNLDK*QMCL-YRDRSVHSALSHSWTQRWHD 256
+ KY+L++ + + +V +LN++ +C ++ +S+ + L +W+D
Sbjct: 82 VLKYVLESPVEIAMDILFVIVILNIESFFLCTHFKHQSLATILMQHIFPKWYD 134
>AL021472-7|CAA16303.2| 283|Caenorhabditis elegans Hypothetical
protein Y17D7B.6 protein.
Length = 283
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 24 LQNIIIYTYVNIKSDIDQQEGSNESHSYPR*GLLLSPSGPCVAS 155
L + Y YVN I +E SN ++ + + P+G C AS
Sbjct: 65 LTTCVFYNYVNDGKTITVEENSNNAYVAIKTNISNIPNGTCPAS 108
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 27.5 bits (58), Expect = 7.6
Identities = 24/115 (20%), Positives = 48/115 (41%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMIDGRWCDVRIPNGKGGPASA 413
G++ V +K + T + F + + Q A + I ++I GK +
Sbjct: 193 GKVEEVDIKTPINTDAAYAFVMFQTVDQAIQAKAEEQDRPIRAGGSRMKIGYGK---SQV 249
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLDPEVARSLC 248
R++FVG E L+ F EFG V ++ + +++V + + ++ C
Sbjct: 250 SRRLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHG-QPYAYVVYENTHTSQEAC 303
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 27.5 bits (58), Expect = 7.6
Identities = 24/115 (20%), Positives = 48/115 (41%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMIDGRWCDVRIPNGKGGPASA 413
G++ V +K + T + F + + Q A + I ++I GK +
Sbjct: 193 GKVEEVDIKTPINTDAAYAFVMFQTVDQAIQAKAEEQDRPIRAGGSRMKIGYGK---SQV 249
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLDPEVARSLC 248
R++FVG E L+ F EFG V ++ + +++V + + ++ C
Sbjct: 250 SRRLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHG-QPYAYVVYENTHTSQEAC 303
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 27.5 bits (58), Expect = 7.6
Identities = 24/115 (20%), Positives = 48/115 (41%)
Frame = -1
Query: 592 GELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMIDGRWCDVRIPNGKGGPASA 413
G++ V +K + T + F + + Q A + I ++I GK +
Sbjct: 170 GKVEEVDIKTPINTDAAYAFVMFQTVDQAIQAKAEEQDRPIRAGGSRMKIGYGK---SQV 226
Query: 412 HRKVFVGRCTEALSAEDLRDYFAEFGQVTDVFVPRPFRAFSFVTFLDPEVARSLC 248
R++FVG E L+ F EFG V ++ + +++V + + ++ C
Sbjct: 227 SRRLFVGGLGSWCDKEILQKAFGEFGFVENIDYDHG-QPYAYVVYENTHTSQEAC 280
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMID 467
FGE++ Q+ R +GFG+++F +Q A+ +M D
Sbjct: 230 FGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFD 272
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMID 467
FGE++ Q+ R +GFG+++F +Q A+ +M D
Sbjct: 230 FGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFD 272
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 595 FGELLMVQVKRDLRTGLSKGFGFIKFAEYEAQLGALGRRHMID 467
FGE++ Q+ R +GFG+++F +Q A+ +M D
Sbjct: 230 FGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFD 272
>AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical
protein C30F12.7 protein.
Length = 373
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 239 PHHQRGLSKHLNCITKTICSLPGDGLG 159
P H+ L+K+ T+C+LPGDG+G
Sbjct: 23 PGHRLPLAKYGG--RHTVCALPGDGIG 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,858
Number of Sequences: 27780
Number of extensions: 329631
Number of successful extensions: 986
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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