Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K12
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   5.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.1  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 312 RDRSVHSALSHSWTQRWHDHYVA 244
           RDR  +  L +   Q WHD  VA
Sbjct: 140 RDRYTNLGLVNEQGQTWHDLRVA 162


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 468 MGVGVTCAFRMARVDRRL 415
           M   + C FR + VDRRL
Sbjct: 49  MTYSMDCYFRQSWVDRRL 66


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 33  IIIYTYVNIKSDIDQQEGSNESHSYPR 113
           +IIYTY +I  +I ++   +E     R
Sbjct: 219 VIIYTYTSILLEIRRRSKKSEDDKIRR 245


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -1

Query: 346 AEFGQVTDVFVP 311
           AE+G VT+++VP
Sbjct: 87  AEYGGVTELYVP 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,853
Number of Sequences: 438
Number of extensions: 4353
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)