Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K11
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           66   2e-12
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   0.62 
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr...    25   3.3  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    24   5.8  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    24   5.8  

>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 65.7 bits (153), Expect = 2e-12
 Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
 Frame = +3

Query: 15  DDPESYLKSLRDLIKENRE--KVVAIGECGLDYDRLHFCQKETQLKYFEYQLQLSQDFNL 188
           + PE YL  L  L  + +   KVVA GE GLDYDRLH+   + Q  YFE QL+++    L
Sbjct: 97  EGPEDYLVKLEALANKGKASGKVVAFGEFGLDYDRLHYAPADVQKMYFEEQLKVAVRVQL 156

Query: 189 PLFLHCR 209
           PLFLH R
Sbjct: 157 PLFLHSR 163


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 162 TDIQSTLVVFLFDKSVICHSLDHIR 88
           T + S LV+  + K+  C S+DH+R
Sbjct: 10  TSLHSELVILFYAKNRFCISIDHLR 34


>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 9/21 (42%), Positives = 18/21 (85%)
 Frame = +3

Query: 24  ESYLKSLRDLIKENREKVVAI 86
           + +L+ +RD+I++NRE++ AI
Sbjct: 154 DHWLRHIRDVIEDNREELDAI 174


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 21  PESYLKSLRDLIKENREKVVAI 86
           P+S LKSL DL+ +N +++  I
Sbjct: 832 PDSLLKSLADLLLKNSQELYII 853


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 285 KRRYNSTNELIFISTKVYQLGHLQQLGNEGTKVN*SLDLIATDIQ 151
           +R Y+ +N L FIS+ + +  HL +   E  K+  S+   + +I+
Sbjct: 89  QRLYDESNSLGFISSPLNETEHLSE---ENLKIESSITFTSEEIE 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,198,174
Number of Sequences: 5004
Number of extensions: 19768
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)