Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K11
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0412 + 3151059-3151090,3151374-3151833,3151899-3151979,315...    81   3e-16
07_01_0409 + 3143838-3144017,3144345-3144461,3144659-3144739,314...    79   9e-16
04_01_0280 - 3757107-3758180                                           29   1.3  
08_02_0368 - 16312961-16314588,16314794-16314890,16316360-163164...    27   5.2  
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300...    26   6.9  
07_03_0630 - 20097672-20097772,20097983-20102012                       26   6.9  
03_05_1043 - 29898829-29898930,29899174-29899234,29899638-298997...    26   6.9  

>07_01_0412 +
           3151059-3151090,3151374-3151833,3151899-3151979,
           3152682-3152752,3152827-3152937,3153149-3153231,
           3153489-3153705,3154169-3154252,3154423-3154498
          Length = 404

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 36/66 (54%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
 Frame = +3

Query: 18  DPESYLKSLRDLIKEN--REKVVAIGECGLDYDRLHFCQKETQLKYFEYQLQLSQDFNLP 191
           DPE + ++L  L KE   + KVVA+GECGLDYDRLHFC  + Q KYF+ Q +L++   LP
Sbjct: 171 DPEGHFQALLALAKEGIAKGKVVAVGECGLDYDRLHFCPSDVQKKYFKKQFELAEAVKLP 230

Query: 192 LFLHCR 209
           +FLH R
Sbjct: 231 MFLHMR 236



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 247 NKDKFIGGVVPSFDGSVDALEKILSF 324
           N  +F GGV  SF G+ +  +K+LSF
Sbjct: 249 NLYRFPGGVTHSFTGTAEDRDKLLSF 274


>07_01_0409 +
           3143838-3144017,3144345-3144461,3144659-3144739,
           3145335-3145405,3145479-3145589,3146194-3146382,
           3146643-3146670
          Length = 258

 Score = 79.0 bits (186), Expect = 9e-16
 Identities = 35/66 (53%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
 Frame = +3

Query: 18  DPESYLKSLRDLIKEN--REKVVAIGECGLDYDRLHFCQKETQLKYFEYQLQLSQDFNLP 191
           DP+ + ++L  L KE   + KVVA+GECGLDYDRLHFC  + Q KYF+ Q +L++   LP
Sbjct: 106 DPKGHFQALLALAKEGIAKGKVVAVGECGLDYDRLHFCPSDVQKKYFKKQFELAEAVKLP 165

Query: 192 LFLHCR 209
           +FLH R
Sbjct: 166 MFLHMR 171


>04_01_0280 - 3757107-3758180
          Length = 357

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
 Frame = +3

Query: 9   FIDDPES-YLKSLRDLIKENR--EKVVAI-----GECGLDYDRLHFCQKETQLKYFE 155
           F DDP + Y K+L  ++ +N   E+V+A+      E  L++D LHF QK++  K FE
Sbjct: 268 FRDDPHTDYEKTLTGILPDNTPIEEVMAVLLHESPESILEHDDLHFVQKDSG-KTFE 323


>08_02_0368 -
           16312961-16314588,16314794-16314890,16316360-16316489,
           16316605-16316657
          Length = 635

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 341 YLHEVLKLNIFSKASTDPSKEGTTPPMNLSLFQLKYIN 228
           Y HE+L++N +S A+    +E   PP   +L  L +++
Sbjct: 378 YAHELLRVNGYSVATPTKVEEPERPPEPANLLHLLHMH 415


>11_06_0768 +
           27129007-27129038,27129140-27129220,27129723-27130089,
           27130165-27130255,27130515-27130595,27130764-27131830,
           27132060-27132071,27132465-27133209,27133210-27135244,
           27135712-27135787,27135925-27136029,27137080-27137166
          Length = 1592

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 33  LKSLRDLIKENREKVVAIGECGLDYDRLHFCQKETQLKYFEYQLQLSQDFNLPL 194
           +  L +LI+ + E+     +  L+ D LH  QK+       Y +  S+ FN PL
Sbjct: 607 ITELDELIRHSPEQSQKTNDAPLEEDNLHLRQKDGSHGTTTYCI-ASESFNAPL 659


>07_03_0630 - 20097672-20097772,20097983-20102012
          Length = 1376

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +3

Query: 15   DDPESYLKSLRDLIKENREKVVAIGECGLDYDRLHFCQKETQLKYFEYQL 164
            DDP S +K   + +KE   K        L  + LH  Q+  Q   F + L
Sbjct: 1322 DDPSSLMKEREEWLKEEERKFHIHDSHALVKEILHLNQESRQCFCFRHHL 1371


>03_05_1043 -
           29898829-29898930,29899174-29899234,29899638-29899744,
           29899839-29899943,29900184-29900270,29900553-29900633,
           29900834-29900906,29901120-29901232,29901781-29901874,
           29902032-29902087,29902171-29902254,29902550-29902642,
           29902751-29902924,29903033-29903146,29903404-29903490
          Length = 476

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 303 SINRPIKRRYNSTNELIFISTKVYQLGHLQQLGNEGTK 190
           S+NR + R YN +N + F    V  L   Q  G+EG +
Sbjct: 102 SLNRHLSRAYNFSNGVAFGDGFVEVLAATQTPGSEGKR 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,839,792
Number of Sequences: 37544
Number of extensions: 99287
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)