Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K11
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   1.0  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.1  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 6   DFIDDPESYLKSLRDLIKENREKVVAI 86
           D I DP++YL+ ++  IK+ +E V+ +
Sbjct: 152 DTIADPQTYLE-IQKXIKKAKEDVIEV 177


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
 Frame = +3

Query: 15  DDPESYLKSLRDLIKENREK-VVAIGECGLDYDRLHFCQKETQLKYFEYQLQLSQDFNLP 191
           DD E  +   R L    +   +V +  C    DRL+F  +        YQ+Q    F  P
Sbjct: 26  DDVECTMVEKRVLALSTKPPFLVQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCGKFKEP 85

Query: 192 L 194
           +
Sbjct: 86  V 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,186
Number of Sequences: 438
Number of extensions: 1451
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)