Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K10
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.08c |||traub transciption factor family protein |Schizos...    31   0.075
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    27   1.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   1.6  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   3.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   6.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    24   8.6  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    24   8.6  
SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyc...    24   8.6  

>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 31.1 bits (67), Expect = 0.075
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +3

Query: 213 KQSQEEINNVLGGEKYISPVNEYSSLSKQFSEMNPDF-FTMASKIYVGNQFILNESFKIT 389
           + S EE N+ LG E Y+  V+E    SKQ  +++P F     S+  + N   LN      
Sbjct: 34  EDSSEEENDTLGREHYVD-VSESKLRSKQAPQLDPKFKGRKTSRQELLNSGSLNSQSSSP 92

Query: 390 TRQYESEIDTID 425
           + + +SE D  D
Sbjct: 93  SEEEDSEEDEND 104


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 117 LKEAYTSSDDKNVVSSPLGAMFLLSLYRDGAGKQSQEEINNVL 245
           L + Y S D++ +   P     L +LY D  G  +++E+N+ L
Sbjct: 516 LDQGYLSRDNRELWILPFAYYELAALYWDMHGMAAEKEVNHYL 558


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -2

Query: 277 SLTGEIYFSPPNTLLISSWLCLPAPSL*RESKNIAPNGDDTTFLSSLDVYASLRSFSEAL 98
           S+TG +Y   P T   SS  C P  +   ++ N  P GD  T  S    Y++  S +  +
Sbjct: 109 SVTGTVYV--PYT---SSVACFPYAT--SDAPNPIPRGDSATSTSIAPTYSASDSSATTI 161

Query: 97  SMASP 83
           + +SP
Sbjct: 162 TSSSP 166


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 261 ISPVNEYSSLSKQFSEMNPDFFTMASK 341
           +SP +EY ++ +Q SE N  F+ + +K
Sbjct: 99  LSPSSEYKAIYEQISEKNRLFYLIKTK 125


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 244 NTLLISSWLCLPAPSL*RESKNI--APNGDDTTFLSSLDVYASLRSFSEALSMASPRAVR 71
           +TLL SS    P+ S     K++  +P GD  +  SSL    +  + S  L+M +P + +
Sbjct: 141 STLLSSSLTSSPSNSGLSLDKSLPSSPKGDSPSLSSSLPSLTTKSNLSGNLNMVTPASTQ 200



 Score = 24.2 bits (50), Expect = 8.6
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -2

Query: 205 PSL*RESKNIAPNGDDTTFLSSLD-VYASLRSFSEALSMASPRAVRS 68
           PSL  +S N++ N +  T  S+    ++S   FS ALS ASP  VR+
Sbjct: 179 PSLTTKS-NLSGNLNMVTPASTQGPAFSSKHGFSNALSTASPIPVRT 224


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 45  FHIFGRDYERTALGDAIDKASLKLLKEAYTSSDDKNVVSSPLGAM 179
           FHI   DY RT   D +++ + ++  E  + S     V   LG +
Sbjct: 401 FHILDNDYSRTVTLDEMEQFTREISIEFRSISSSLRDVDLALGKL 445


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 132 TSSDDKNVVSSPLGAMFLLSLYRDGAGKQS 221
           TSS   ++ SS  GA F  S Y +G+G  S
Sbjct: 416 TSSTMNSLNSSRFGAYFSKSRYVEGSGSMS 445


>SPAC13G7.07 |arb2||argonaute binding protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 266

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 183 RTSHPMETTPHSCHHWMY 130
           R S P+E++P   H W+Y
Sbjct: 77  RISIPLESSPSEPHSWIY 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,775
Number of Sequences: 5004
Number of extensions: 37736
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)