Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K10
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 31 0.51
03_05_0294 + 22855503-22855946,22856346-22856399 29 1.2
11_01_0771 + 6453130-6454488 29 1.6
05_04_0022 - 17217626-17217643,17217740-17217856,17217987-172181... 28 2.7
01_06_1194 - 35313132-35313154,35314462-35314604,35314751-353154... 28 2.7
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 27 4.8
01_06_0799 - 32072656-32072841,32072846-32072950,32073726-320738... 27 4.8
01_06_0263 + 28002315-28002634,28003263-28003350,28004296-280043... 27 4.8
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 27 6.3
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 27 6.3
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 27 8.3
01_01_1152 + 9170628-9171899 27 8.3
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 30.7 bits (66), Expect = 0.51
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +3
Query: 147 KNVVSSPLGAMFLLSLYRDGAGKQSQEEINNVLGGEKYISPVNEYSSLSKQF-----SEM 311
+NV SPL LSL GAG +++++ + LGG ++ ++ Q S
Sbjct: 35 RNVAFSPLSLHVALSLVAAGAGGATRDQLASALGGPGSAEGLHAFAEQLVQLVLADASGA 94
Query: 312 NPDFFTMASKIYVGNQFILNESF-KITTRQYESEIDTID 425
A ++V L ++F + +Y++E ++D
Sbjct: 95 GGPRVAFADGVFVDASLSLKKTFGDVAVGKYKAETHSVD 133
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 29.5 bits (63), Expect = 1.2
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Frame = +3
Query: 150 NVVSSPLGAMFLLSLYRDGAGKQSQEEINNVLG--GEKYISPVNEYSSLSKQ--FSEMNP 317
NV SPL LSL GAG +++++ ++LG G ++ ++ Q ++ +P
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 318 ---DFFTMASKIYVGNQFILNESFK-ITTRQYESEIDTID 425
A +++ + L +SFK + +Y++E ++D
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVD 144
>11_01_0771 + 6453130-6454488
Length = 452
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +3
Query: 60 RDYERTALGDAIDKASLKLLKEAYTSSDDKNVVSSPLGAMFLLSLYRDGAGKQSQEEINN 239
R + A+ + +++L +S +N+ SPL LSL GA + +EI
Sbjct: 8 RRHRHRAISGGLTALAVRLADRLGAASPGRNLAFSPLSVHAALSLAAAGAAGGTLDEILA 67
Query: 240 VLG 248
VLG
Sbjct: 68 VLG 70
>05_04_0022 -
17217626-17217643,17217740-17217856,17217987-17218112,
17218194-17218340,17218423-17218533,17218625-17218747,
17218827-17218958,17219157-17219252,17219532-17219653,
17219833-17220130,17220213-17220458,17220711-17220852,
17221068-17222105,17222183-17222262,17222558-17222800,
17222907-17222967,17224059-17224675
Length = 1238
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 33 DVQAFHIFGRDY-ERTALGDAIDKASLKLLKEAYTSSDDKNVVSSPLG 173
D++ F F + +R+AL D + + S+ +A++ SD+ + VSS G
Sbjct: 417 DLRCFSNFSTKFMKRSALSDIVSRGSMSRKFKAFSQSDEWSDVSSRWG 464
>01_06_1194 -
35313132-35313154,35314462-35314604,35314751-35315444,
35315746-35315895,35316011-35316419
Length = 472
Score = 28.3 bits (60), Expect = 2.7
Identities = 21/57 (36%), Positives = 26/57 (45%)
Frame = +3
Query: 78 ALGDAIDKASLKLLKEAYTSSDDKNVVSSPLGAMFLLSLYRDGAGKQSQEEINNVLG 248
A GD+ A LL E Y + +S LGA+F +S GAG S VLG
Sbjct: 14 AAGDS-GAAETSLLPERYAGAGTPAAAASVLGAVFNVSTSVVGAGIMSIPAAMRVLG 69
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 27.5 bits (58), Expect = 4.8
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +3
Query: 15 DQALFTDVQAFHIFGRDYERTALGDAIDKASLKLLKEAYTSSDDKNVVSSPLGAMFLLSL 194
D+ + V+ FHIF +D + L KAS + T+ SS G LL +
Sbjct: 613 DETINEGVRRFHIFIKDRKTNILPPDTRKASYLAVMRTVTT-------SSRAGYDALLKI 665
Query: 195 YRDGAGKQSQEEI 233
YR+ A Q + I
Sbjct: 666 YRETAEAQEKSRI 678
>01_06_0799 -
32072656-32072841,32072846-32072950,32073726-32073839,
32073935-32073996,32074709-32074745,32075091-32075179,
32075331-32075604
Length = 288
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 168 LGAMFLLSLYRDGAGKQSQEEINNVLGGEKYISP 269
LG + + +Y D Q +NN++ EKYI+P
Sbjct: 212 LGKFYEIVVYSDQLSMVYQNFLNNLVVSEKYINP 245
>01_06_0263 +
28002315-28002634,28003263-28003350,28004296-28004377,
28004637-28004764
Length = 205
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -2
Query: 325 KKSGFISENCLLKLLYSLTGEIYFSPPNTLLIS 227
++SGF N + KLL S+TG S P T+++S
Sbjct: 125 RRSGFQKSN-MKKLLASITGSQKISLPTTIVVS 156
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 105 SLKLLKEAYTSSDDKNVVSSPLGAMFL 185
S L E+ +SSDD N V SP ++FL
Sbjct: 176 SFSPLHESSSSSDDDNAVPSPTFSLFL 202
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 27.1 bits (57), Expect = 6.3
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = -3
Query: 297 ACLSYYTR*QAK-YIFHR--PTHC*SLLGFVYRLRLCRGRVRTSHPMETTPHSC 145
A LS+Y + +A+ ++ R P C +L F+ R + GRVR+ P+ T H+C
Sbjct: 121 AALSWYAQLRARSFVESRLLPAACAALGEFLQR-EVHLGRVRSVSPLGITLHTC 173
Score = 27.1 bits (57), Expect = 6.3
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +3
Query: 204 GAGKQSQEEINNVLGGEKYISPVN---EYS-SLSKQFSEMNPDFFTMASKIYVGNQFILN 371
G G+ S + + GGE+ SP + EYS + S + E+ P+ AS + +GN +LN
Sbjct: 410 GPGESSSDGGHTNGGGEEG-SPNDGPTEYSETTSMDYGELPPEKSNFASTMLIGNTDVLN 468
Query: 372 ES 377
S
Sbjct: 469 GS 470
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 353 PDVYFTSHSEEIWIHLRKLL 294
P++YF + EEIW+ + KLL
Sbjct: 2093 PELYFKQNMEEIWMIVCKLL 2112
>01_01_1152 + 9170628-9171899
Length = 423
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 147 KNVVSSPLGAMFLLSLYRDGAGKQSQEEINNVLG 248
+N + SPL L+L DGA ++Q E+ LG
Sbjct: 59 RNFIVSPLSFHAALALVADGARGETQRELLGFLG 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,239,197
Number of Sequences: 37544
Number of extensions: 229924
Number of successful extensions: 548
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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