Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K09
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   2.8  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   3.7  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.5  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    25   6.5  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    24   8.6  

>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 205 LSTIKRS*AEIMNPVSTGPAFVDFNHPNYP 294
           L+  KR   ++  P S  P+F+D N P+ P
Sbjct: 302 LNNEKRIPPQLAQPTSHVPSFIDTNSPSMP 331


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +2

Query: 41  FSSSPVLAMACA-----NRVHVVDHNPDYNPGQVHVVDNSGVPSDGN 166
           F +SP+++  CA     +   VV  NPD N  + ++  NSG   +GN
Sbjct: 562 FFTSPLVSNVCAYADVNHAKPVVIVNPDENGLRTYLTKNSGSSFNGN 608


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 152 PSDGNSDHVVIANPDPFFSQPSNGPR 229
           P+ GN D+   +   P +SQPS  P+
Sbjct: 85  PAVGNQDYSKPSYSQPSYSQPSQPPK 110


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 352 YLYETFTSHHGREGCRIAWVDNWD 281
           Y+Y++      +   R  WV+NWD
Sbjct: 55  YIYKSNPGMEIKNAIRNGWVENWD 78


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 195 SGFAITTWSLLPSDGTPLL 139
           S F +  W++LP  G P+L
Sbjct: 899 SCFVLRIWNMLPETGVPIL 917


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,937,613
Number of Sequences: 5004
Number of extensions: 41255
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)