Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K09
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801...    31   0.51 
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178...    29   1.2  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   2.7  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    28   2.7  
05_05_0330 + 24137188-24137619                                         28   3.6  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   4.8  
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    27   4.8  
01_06_0762 + 31793160-31793237,31793706-31793972                       27   4.8  
12_01_0495 - 3935395-3937110                                           27   8.3  
07_03_0380 + 17460078-17460782,17461194-17461252,17461388-174614...    27   8.3  
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692...    27   8.3  

>09_02_0511 -
           10079180-10079355,10079656-10079722,10080144-10080181,
           10080255-10080336
          Length = 120

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 83  VHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNG 223
           V+ V    + +PG   +++N+G  S GN   ++  N  PFF   SNG
Sbjct: 41  VYDVTSYVEEHPGGDEILNNAGATSKGNYALILPVNEFPFFLVYSNG 87


>03_05_0226 -
           22115285-22115404,22115477-22116661,22117037-22117861,
           22118029-22118106,22118370-22118420,22118510-22118581,
           22118666-22118667,22119453-22119557,22119668-22119749,
           22120178-22120227,22120514-22120567,22121084-22121164,
           22121567-22121656,22121884-22121964,22122304-22122544
          Length = 1038

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 205 EERIRVRNNHVVTIAVRWNTTIVHHVNLAWIIIRVMIDHVHSVCAR 68
           E  +  RNN+ +         ++   NL W IIRV +DH H +  R
Sbjct: 461 ETVVAERNNNEIKATSCNCALVISKRNLIWRIIRVNLDHNHKMSPR 506


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 331 SHHGREGCRIAWVDNWDD*NRR 266
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/56 (21%), Positives = 25/56 (44%)
 Frame = +3

Query: 87   TWSIITLIIIQARFTWWTIVVFHRTAIVTTWLLRTRILSSLNHQTVLGGNYEPSKH 254
            T  ++ ++ + ++ TW  +++    A+   W+ R  I SS     +L     P  H
Sbjct: 1066 TIQLLGIVAVMSKVTWQVLILIVPMAVACMWMQRYYIASSRELTRILSVQKSPVIH 1121


>05_05_0330 + 24137188-24137619
          Length = 143

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 104 GYDRPRALCLRTPWP 60
           G  RP  LC RTPWP
Sbjct: 78  GVVRPSPLCARTPWP 92


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 289 YPPKRYDNPLARGGK 333
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 205 EERIRVRNNHVVTIAVRWNTTIVHHVNLAWIIIRVMIDHVHSVCAR 68
           E  +  RNN+ +         ++   NL W I RV +DH H +  R
Sbjct: 527 ETVVAERNNNEIKATSCNCALVISKRNLIWRITRVNLDHNHKMSPR 572


>01_06_0762 + 31793160-31793237,31793706-31793972
          Length = 114

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 211 LREERIRVRNNHVVTI-AVRWNTTIVHHVNLAWI 113
           ++EER +  +N V  + AVRW  T+    +LAW+
Sbjct: 79  IKEERAKAVSNRVDCVPAVRWAATLELSRSLAWL 112


>12_01_0495 - 3935395-3937110
          Length = 571

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +2

Query: 95  DHNPDYNPGQVHVVDNSGVPSDGNSD--HVVIANPDP 199
           DH   Y+    HVVD    P  G  D  HV +A P P
Sbjct: 342 DHYLGYHSHDAHVVDAEATPEQGYHDDAHVAVA-PAP 377


>07_03_0380 +
           17460078-17460782,17461194-17461252,17461388-17461492,
           17461732-17461867,17461919-17461939
          Length = 341

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 86  HVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIA 187
           H+V+  P +  G+   V  + VP DG  +H+V++
Sbjct: 282 HIVERKP-FRCGRYPPVVRTAVPVDGRFEHIVLS 314


>03_02_0260 -
           6924532-6924757,6925443-6925546,6925729-6926007,
           6926093-6926368,6926460-6926678,6926758-6926926,
           6927208-6927382,6927489-6927600,6929566-6929820
          Length = 604

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 131 VVDNSGVPSDGNSDHVVIANPDPFFSQP 214
           V++N  +P   N  HVV+ANP P    P
Sbjct: 248 VLENCQLPH-ANHGHVVLANPSPILFYP 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,349
Number of Sequences: 37544
Number of extensions: 293423
Number of successful extensions: 753
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)