Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K09
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical p...    29   1.8  
AF016654-5|AAB66027.1|  348|Caenorhabditis elegans Hypothetical ...    28   2.4  
AC024775-8|AAK68458.1|  347|Caenorhabditis elegans Hypothetical ...    27   4.3  
Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical pr...    26   9.8  
AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical ...    26   9.8  

>Z70307-11|CAA94337.1|  488|Caenorhabditis elegans Hypothetical
           protein C39E9.10 protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +3

Query: 84  CTWSIITLIIIQARFTWW-TIVVFHRTA 164
           CTW    L+ +    +WW   V+ H TA
Sbjct: 229 CTWGYTALVFVSGTLSWWEPTVIQHLTA 256


>AF016654-5|AAB66027.1|  348|Caenorhabditis elegans Hypothetical
           protein C17A2.3 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 240 HNFRLGPFDG*EKKGSGFAITTWSLLPSD 154
           HN RL P+D  E +G G  + +  + PSD
Sbjct: 246 HNVRLCPYDRGEDRGMGRCLESVGITPSD 274


>AC024775-8|AAK68458.1|  347|Caenorhabditis elegans Hypothetical
           protein Y41D4A.8 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -1

Query: 247 LGS*FPPRTV*WLREERIRVRNNHVVTIAVRWNTTIVHHVNLAWIIIRVMIDH 89
           +G   P ++V WL ++R+      ++T +V +NTT    V+++ +  R  ID+
Sbjct: 169 IGVCHPYKSVEWLPKKRVTTFIIGLLTFSVIFNTTRFFEVHISNVCYRENIDY 221


>Z93380-2|CAB07596.1|  340|Caenorhabditis elegans Hypothetical
           protein F28C12.2 protein.
          Length = 340

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 96  IITLIIIQARFTWWTIVVFHRTAIV---TTWLLRTRILSSLNHQTVL 227
           IIT+++I   FTW  I    +  I    T  +L   +L+S+ HQT +
Sbjct: 34  IITVVLISYCFTWLAIQALWKHNIFSNSTRLILIVCLLNSVVHQTTM 80


>AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical
           protein C09E8.1a protein.
          Length = 783

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 59  LAMACANRVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDH 175
           +  A A R H V+HN   N  +   VD + +P     D+
Sbjct: 728 IVTAIAIRAHSVEHNRPSNTREASEVDEAELPRGAGDDN 766


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,876,654
Number of Sequences: 27780
Number of extensions: 248647
Number of successful extensions: 581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)