Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K08
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...   104   6e-24
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    83   2e-17
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   2.0  
SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyce...    26   2.0  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    25   3.4  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   4.5  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   4.5  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   7.9  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  104 bits (249), Expect = 6e-24
 Identities = 49/93 (52%), Positives = 60/93 (64%)
 Frame = -3

Query: 407 CHKXXXXXXXXXXXXXGEEISTRPFQLVTGRTWKGSAFGGYKSRDSVPKLVDEYLKNKLP 228
           CHK             G+EISTRPFQLVTGR W+G AFGG K R  +P LV EYL +KL 
Sbjct: 287 CHKGWGQSIVIGVAAAGQEISTRPFQLVTGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLE 346

Query: 227 LDEFVTHNFQLKEINEAFHLMHIGKSIRAVVHL 129
           +D+++TH   LKEINEAF  MH G  I+ V+ +
Sbjct: 347 IDKYITHRRPLKEINEAFTDMHNGNCIKTVLSI 379


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 41/93 (44%), Positives = 53/93 (56%)
 Frame = -3

Query: 407 CHKXXXXXXXXXXXXXGEEISTRPFQLVTGRTWKGSAFGGYKSRDSVPKLVDEYLKNKLP 228
           CHK             G+ +  RPF +VTGR   GSAFGG K R  +P  VDEY++    
Sbjct: 283 CHKGWGKLCVIGVAAAGKTLDFRPFLVVTGRQVLGSAFGGVKGRSELPNFVDEYMQGHFK 342

Query: 227 LDEFVTHNFQLKEINEAFHLMHIGKSIRAVVHL 129
           +DE++T+   LK IN+AF  MH GK IR VV +
Sbjct: 343 VDEYITNEEPLKNINKAFDHMHEGKCIRCVVDM 375


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 86  NIFKCSEIYVLQNFTSV 136
           NI+ CSE++ LQ FTS+
Sbjct: 37  NIYLCSEVHGLQFFTSI 53


>SPBC27.01c |||secretory pathway protein Pga2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 290 GYKSRDSVPKLVDEYLKN--KLPLDEFVTHNFQLKE 189
           GY +R  + K  +EY KN  K PLD +   +  ++E
Sbjct: 93  GYSARRRIRKQREEYFKNQDKSPLDAYADDDEDIEE 128


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 353 EISTRPFQLVTGRTWKGSAFGGYKSRDSVPKLVDEYLKNKLPL 225
           E+ T+ + LV G T   +  GGYK    V ++V++ + N  P+
Sbjct: 170 ELLTQCYILVQGTTV--AVMGGYKGLKEVRRIVEDCMHNIHPI 210


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 87  TYLNALRYMFYKILQVYNSTD*LSNMHQVESFID 188
           TY+N + +++  ++  Y  T  LSN+ ++ +  D
Sbjct: 178 TYINYITHLYEYLVSFYRRTHPLSNLDKIIAVFD 211


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 53  RNSSSLKMQWYNIFKCSEIYVLQNFTSVQQHGLTFQ 160
           +  SSL      +   S  Y L+  TSVQQ GL ++
Sbjct: 245 KRQSSLIPDLITMKNTSSSYSLEELTSVQQMGLVYE 280


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 304 PFHVRPVTSWKGRVLISSPA 363
           PFH  P+ S+  R++ISS A
Sbjct: 89  PFHENPLHSFVYRIMISSEA 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,870
Number of Sequences: 5004
Number of extensions: 27230
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)