Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K06
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    28   0.65 
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    27   1.5  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    24   8.0  

>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 29  KAVKTVIDDVDGL-RPAPHPTDRVWEVIKEHFNANTRADLLPHAYKDFNKSQFAGVTSKL 205
           +A K   DDV    +P      R W ++KE +N + + D LP+  +++ +   AG+ S++
Sbjct: 204 RAKKIDWDDVPWREKPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEE---AGLPSEM 260


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 23/73 (31%), Positives = 33/73 (45%)
 Frame = +2

Query: 32  AVKTVIDDVDGLRPAPHPTDRVWEVIKEHFNANTRADLLPHAYKDFNKSQFAGVTSKLSV 211
           A + V D +       HP  R     KE+  + TR DLL +  KD  +S    ++S  S+
Sbjct: 154 ADEVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQY-IKDNYRSDRMIISSAGSI 212

Query: 212 IAEEGDELARHIF 250
             EE  +LA   F
Sbjct: 213 SHEELVKLAEKYF 225


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 201 FDVTPANCDLLKSLYACGNKSALVLALKCSLITSHT 94
           F +T A  DLL S+   G  S+  L+++   +  HT
Sbjct: 438 FQITQAPLDLLLSMITLGMHSSNDLSIRSLAVEIHT 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,642,870
Number of Sequences: 5004
Number of extensions: 28149
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)