Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K06
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0174 + 2504058-2504253,2504929-2505076,2505265-2505456,250... 33 0.12
07_01_0345 + 2497910-2498114,2498311-2498458,2498551-2498742,249... 32 0.21
01_01_0388 - 3003096-3003149,3003168-3003197,3003245-3003304,300... 29 1.9
06_03_1491 - 30510016-30510021,30510418-30511026,30511119-305114... 28 2.5
04_04_0929 - 29474540-29475247,29475485-29475850,29476032-294760... 28 3.3
02_05_0337 - 28060009-28060716,28061055-28061498,28061732-280617... 28 3.3
02_01_0128 - 930461-930828,931223-931369,931567-931704,931888-93... 27 4.4
09_06_0090 + 20787453-20787507,20787600-20788296,20788949-20789189 27 5.8
04_03_0023 - 9619836-9620102,9620134-9620337 27 5.8
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 27 7.7
>09_01_0174 +
2504058-2504253,2504929-2505076,2505265-2505456,
2505878-2506006,2506368-2506537,2506946-2507076,
2507391-2507468
Length = 347
Score = 32.7 bits (71), Expect = 0.12
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = +2
Query: 5 GGAYWIAHKAVKTVIDDVDGLRPAPHPTDRVWEVIKEHFNANTRADLLPHAYKDFNKSQF 184
G Y IA +A+ V+ DG PH T+ E++++ ++ +L+ Y D + ++
Sbjct: 178 GSGYGIAAQALTAVVKAYDGR--GPH-TNLTREILRK-LELSSPDELIGWTYADPSWARI 233
Query: 185 AGVTSKLSVIAEEGDELARHI 247
A + + AE+GDE+A I
Sbjct: 234 AALVPVVVSSAEDGDEVANKI 254
>07_01_0345 +
2497910-2498114,2498311-2498458,2498551-2498742,
2498918-2499046,2499304-2499473,2499659-2499789,
2500007-2500090
Length = 352
Score = 31.9 bits (69), Expect = 0.21
Identities = 25/103 (24%), Positives = 43/103 (41%)
Frame = +2
Query: 5 GGAYWIAHKAVKTVIDDVDGLRPAPHPTDRVWEVIKEHFNANTRADLLPHAYKDFNKSQF 184
G AY I+ +A+ V+ DG P T+ + + + + +L+ Y+D + ++
Sbjct: 181 GSAYGISAQALTAVVRAYDGRGPETALTNSILDFL----GLASPDELIGWTYEDQSWARI 236
Query: 185 AGVTSKLSVIAEEGDELARHIFXXXXXXXXXXXXXXXQRCETS 313
A + + AE GDE+A I QR E S
Sbjct: 237 ADLLPVVVESAEAGDEVANKILHNSVGELASSVKAVVQRLELS 279
>01_01_0388 -
3003096-3003149,3003168-3003197,3003245-3003304,
3003431-3003552,3003669-3003794,3003890-3003980,
3004261-3004386,3004501-3004656
Length = 254
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 92 RVWEVIKEHFNANTRADLLPHAYKDFNKSQFAGVTSKL 205
R W+ I+EH T + HA K F K Q G+ + L
Sbjct: 36 RDWKKIEEHVGTKTTIQIRSHAQKYFLKVQKMGLAAGL 73
>06_03_1491 -
30510016-30510021,30510418-30511026,30511119-30511484,
30511660-30511721,30511826-30511937,30512074-30512211,
30512788-30512811
Length = 438
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +2
Query: 14 YWIAHKAVKTVIDDVDGLRPAPHPTDRVWEVIKEHFNANTRADLLPHAYKDFNK 175
Y I + K ++ D A R W I+EH T + HA K F+K
Sbjct: 59 YTITKQREKWTEEEHDKFLEALKLYGRSWRQIQEHIGTKTAVQIRSHAQKFFSK 112
>04_04_0929 -
29474540-29475247,29475485-29475850,29476032-29476093,
29476191-29476302,29476401-29476529,29476724-29476738
Length = 463
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 92 RVWEVIKEHFNANTRADLLPHAYKDFNK 175
R W I+EH T + HA K F+K
Sbjct: 79 RAWRRIQEHIGTKTAVQIRSHAQKFFSK 106
>02_05_0337 -
28060009-28060716,28061055-28061498,28061732-28061793,
28061896-28062007,28062144-28062263
Length = 481
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 92 RVWEVIKEHFNANTRADLLPHAYKDFNK 175
R W I+EH T + HA K F+K
Sbjct: 71 RAWRRIQEHIGTKTAVQIRSHAQKFFSK 98
>02_01_0128 -
930461-930828,931223-931369,931567-931704,931888-931975,
932068-932157,932249-932315,933411-933535,934079-934213
Length = 385
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 228 SPSSAITDNFDVTPANCDLLKS 163
+P SA D+ DVTP +C+ L+S
Sbjct: 299 APDSAPNDDSDVTPRSCEKLES 320
>09_06_0090 + 20787453-20787507,20787600-20788296,20788949-20789189
Length = 330
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 165 SLYACGNKSALVLALKCSLITSHTRSVGWGAGLRPSTS 52
S + C + +A L + C +I+S SVG GA PS S
Sbjct: 230 STFTCASGTASYLVVFCPIISSLKSSVGGGA-TNPSAS 266
>04_03_0023 - 9619836-9620102,9620134-9620337
Length = 156
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 159 YACGNKSALVLALKCSLITSHTRSVGWGAGLRPSTS 52
YAC A + + + ++GW AG +PSTS
Sbjct: 12 YACKQAGASSVPSMLYIHVAAATTIGWQAGQKPSTS 47
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 26.6 bits (56), Expect = 7.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 216 AITDNFDVTPANCDLLKSLYACGNKSALVLALKC-SLITSHTRSVGWGAGLRPSTSSITV 40
A+ ++P C + + L + SALV +C SLIT +TR VG G+ P +
Sbjct: 358 AMVRKIKISPVKCMIRQWLESI-KFSALV---ECTSLITRYTRQVGHQLGMHPEGPKLHA 413
Query: 39 FTA 31
T+
Sbjct: 414 ITS 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,298,473
Number of Sequences: 37544
Number of extensions: 235793
Number of successful extensions: 847
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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