Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K06
         (411 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   1.9  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    24   1.9  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   4.3  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 65   LRPAPHPTDRVWEVIKEH 118
            +R  PH +   WE+IK+H
Sbjct: 965  IRDNPHVSAEEWELIKQH 982


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 307 LAALGQWDGVGCKRSASLSEYMPS 236
           LA +GQW   GC     L  +M S
Sbjct: 383 LATVGQWKHEGCSSHERLHPFMAS 406


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 31  SREDGDR*RGWSKASSPPHRPGVGGDQG 114
           S E GD+  G++    PP  PG   ++G
Sbjct: 289 SGEKGDK--GYTGPEGPPGEPGAASEKG 314


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,784
Number of Sequences: 2352
Number of extensions: 8087
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 33349914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)