Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K06
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical pr...    48   2e-06
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    29   1.7  
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...    28   2.3  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    28   3.0  
U37430-3|AAX88825.1|  103|Caenorhabditis elegans Saposin-like pr...    27   5.3  
U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defecti...    27   7.0  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    27   7.0  
U23522-3|AAC46817.1|  432|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity...    27   7.0  
U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical
           protein W06B4.2 protein.
          Length = 521

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
 Frame = +2

Query: 5   GGAYWIAHKAVKTVIDDVDGLRPAPHPTDRVWEVIKEHFNANTRADLLPHAYKDFNKSQF 184
           G A+WIA  A++ + D  DG       TD + +++ +H+N   +  +L + Y  F K + 
Sbjct: 346 GSAFWIARTAIQMLFDAEDGFE-ENFNTDVIKQLLFKHYNITDKTRMLDYLYSKFEKHKI 404

Query: 185 AGVTSKLSVIAEEGDELA-RHIFXXXXXXXXXXXXXXXQRC---ETSSLRVVCVGSVWRS 352
           A  T  L   AE  D+ A    F               +     +   L +V +G V++S
Sbjct: 405 ADFTVSL---AERTDDAAVAEAFRRAGDVLGKHVRTVAKYLTNEDRKVLSIVQIGGVFQS 461

Query: 353 WPLLRPGMLRELT 391
           W  L+ G +  L+
Sbjct: 462 WDALQQGFVASLS 474


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 204 NFDVTPANCDLLKSLYACGNKSALVLALKCSLITSH 97
           N  + P+ CDLL   Y C       L   C + TSH
Sbjct: 79  NLMIKPSPCDLLLKTYFCSKIRGTFLFAFCLVTTSH 114


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 204 NFDVTPANCDLLKSLYACGNKSALVLALKCSLITSH 97
           N  + P+ CDLL   Y C       L   C + TSH
Sbjct: 79  NLMIKPSPCDLLLKTYFCSKIRGTFLFAFCLVTTSH 114


>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
           protein C14B9.8 protein.
          Length = 1226

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 20  IAHKAVKTVIDDVDGLRPAPHPTDRVWEVIKEHFNANTRADLL 148
           +A+K+    + D+D    +P PT     ++KEH +   R  LL
Sbjct: 717 LAYKSRPRDLQDMDSTYQSPPPTQTPLGLVKEHSSGELRQQLL 759


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
           ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 256 GWRCACSPRRPTGPALRDQQ 315
           GW  A +P+RP+GP    QQ
Sbjct: 830 GWHAAPAPQRPSGPPTPQQQ 849


>U37430-3|AAX88825.1|  103|Caenorhabditis elegans Saposin-like
           protein family protein14 protein.
          Length = 103

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 62  GLRPAPHPTDRVWEVIKEHFNANTRADL--LPHAYKDFNK 175
           G+R A +P DR    +++ F+A  + +L  +P A K+  K
Sbjct: 35  GVRAAENPADREAHTVEDKFDAECKKELGIIPFAEKECEK 74


>U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defective
           protein 1, isoformb protein.
          Length = 942

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 322 GRLCRLRLEELASSTTRDAARTHAEKGEGR 411
           G+  R ++EE+ ++TT    RTHA     R
Sbjct: 189 GKKSRQQMEEMRNATTSSTLRTHASTSSPR 218


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
           protein 1, isoforma protein.
          Length = 987

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 322 GRLCRLRLEELASSTTRDAARTHAEKGEGR 411
           G+  R ++EE+ ++TT    RTHA     R
Sbjct: 257 GKKSRQQMEEMRNATTSSTLRTHASTSSPR 286


>U23522-3|AAC46817.1|  432|Caenorhabditis elegans Hypothetical
           protein W06B4.1 protein.
          Length = 432

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
 Frame = +2

Query: 5   GGAYWIAHKAVKTVIDDVD-------GLRPAPHPTDRVWEVIKEHFNANTRADLLPH--- 154
           GGAYW    + +  ++DV+               TD++ +V K  F+     DLL     
Sbjct: 220 GGAYWCGRTSFQMFVNDVERGTENMMSRGNKSSVTDKIKDVFKTVFSMKNDRDLLQMNEI 279

Query: 155 AYKDFNKSQFAGVTSKLS 208
            + ++ K + A  T KL+
Sbjct: 280 CFSNYYKHRLALFTEKLA 297


>AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity
           specification proteinSYD-1 protein.
          Length = 942

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 322 GRLCRLRLEELASSTTRDAARTHAEKGEGR 411
           G+  R ++EE+ ++TT    RTHA     R
Sbjct: 189 GKKSRQQMEEMRNATTSSTLRTHASTSSPR 218


>U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical
           protein F01F1.7 protein.
          Length = 730

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +2

Query: 86  TDRVWEVIKEHFNANTRADLLPHAYKDFNKSQF 184
           +DR W + +E FN + +   +P   +++ ++ F
Sbjct: 276 SDRDWRIFREDFNISIKGGRVPRPLRNWEEAGF 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,424,777
Number of Sequences: 27780
Number of extensions: 170225
Number of successful extensions: 505
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)