Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K05
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    28   1.3  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    27   2.3  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    27   3.0  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   4.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   9.1  

>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = +1

Query: 334 WLWHGYEIRGLENLPDGPYLVIYYHGALPVDMYYLVARMQLFKQTQIHTVADRFMFRIPG 513
           W W GY I+G +  P G   ++    A+ V  Y   +   +     +      FM+   G
Sbjct: 496 WSWDGYPIKGPQPYPHGAVSIVVSICAVLVAPYLYQSGAFMLIGFVLACFGSYFMYINHG 555

Query: 514 WSMLLENL 537
           W   L  L
Sbjct: 556 WCSYLGGL 563


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -1

Query: 567 ASLHGSRDNA*ILEEHRPSRYTKHESVSYSMDLSLLE*LHSCDEIIHIDRQSSVIVDNE 391
           A+ HG  D++  L E + +   K+ SVSY  + S LE   + D++  ID +  +  DN+
Sbjct: 278 ATKHGLMDSS--LAEEKAAPVPKNPSVSYLNEASSLE---NVDDMDDIDVKEPLFSDND 331


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 156 PDAGHRDLPTSSSHYHPHIFK 218
           PD G + LP   +++HPH F+
Sbjct: 236 PDCGLQLLPCGMNYFHPHRFR 256


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 374 CQTVRISLSTITELCLSICIISSHECNYSSRLK 472
           C+  +I  +     C + CI+   EC+YS RLK
Sbjct: 14  CRRKKIRCNRELPSCQN-CIVYQEECHYSKRLK 45


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 563 VCTVPGITHRFSRS 522
           VCT PG   RFSRS
Sbjct: 55  VCTFPGCAKRFSRS 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,216
Number of Sequences: 5004
Number of extensions: 50876
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)