Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K05
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0507 + 18401266-18401341,18401448-18401633,18401918-184019... 34 0.082
01_03_0288 - 14714953-14715253,14716317-14716402,14716573-147166... 34 0.11
06_02_0178 + 12652654-12652877,12652964-12653140,12653141-126532... 32 0.33
01_03_0292 - 14738016-14738316,14738570-14738655,14739002-147391... 31 0.58
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811... 31 0.77
06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230... 29 2.3
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 29 4.1
12_01_0539 - 4245733-4246149,4246406-4246519 28 5.4
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 28 7.1
04_04_0081 + 22601090-22601395,22601714-22602522,22602584-22602611 28 7.1
>10_08_0507 +
18401266-18401341,18401448-18401633,18401918-18401953,
18402244-18402650,18402998-18403099,18403206-18403433
Length = 344
Score = 34.3 bits (75), Expect = 0.082
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Frame = +1
Query: 337 LWHGYEIRGLENLP--DGPYLVIYYHGALPVDMYYLVARMQLFKQTQIHTVADRFMFRIP 510
+++ ++ G+ENLP P + + H + +D+Y L+ + FK ++ FMF I
Sbjct: 159 MFYKLDVEGMENLPPNSSPAVYVANHQSF-LDIYTLLTLGRCFKFISKTSI---FMFPII 214
Query: 511 GWSMLLENLCVIP----------GTVQTCASVLKNGNSLAISPGG 615
GW+M L L VIP ++ C ++K G S+ P G
Sbjct: 215 GWAMYL--LGVIPLRRMDSRSQLDCLKRCVDLVKKGASVFFFPEG 257
>01_03_0288 -
14714953-14715253,14716317-14716402,14716573-14716686,
14716771-14717140,14717224-14717357,14717512-14717617,
14717733-14717854,14718125-14718231,14718522-14718622,
14719007-14719169,14719559-14719614,14720833-14721152
Length = 659
Score = 33.9 bits (74), Expect = 0.11
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Frame = +1
Query: 337 LWHGYEIRGLENLPD-GPYLVIYYHGALPVDMYYLVARMQLFKQTQIHTVADRFMFRIPG 513
L +G +RGL +PD GP L++ YH L +++ + K+ + T+A F +
Sbjct: 384 LRNGKIVRGLAGVPDKGPVLLVGYHQLLAMEITSMAEEFLREKKAVLRTLAHPVFF-VGN 442
Query: 514 WSMLLENLC---VIP--GTVQTCA----SVLKNGNSLAISPGGVYEA 627
+ +L + L V+P G VQ + + + + PGG+ EA
Sbjct: 443 YEILRQELSFFDVVPLYGGVQVSPINTYRLFERDEFVLLYPGGIREA 489
>06_02_0178 +
12652654-12652877,12652964-12653140,12653141-12653214,
12653424-12653530,12653637-12653792,12653933-12654019,
12654247-12654344,12654467-12654554,12654810-12654911
Length = 370
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/73 (30%), Positives = 31/73 (42%)
Frame = +1
Query: 406 HGALPVDMYYLVARMQLFKQTQIHTVADRFMFRIPGWSMLLENLCVIPGTVQTCASVLKN 585
H LP+ + L + +I +A +F P + L +IP T + S L
Sbjct: 165 HSVLPIGVAALADLVGFMPLPKIKVLASSAVFYTPFLRQIWTWLGLIPATRKNFQSYLGA 224
Query: 586 GNSLAISPGGVYE 624
G S I PGGV E
Sbjct: 225 GYSCIIVPGGVQE 237
>01_03_0292 -
14738016-14738316,14738570-14738655,14739002-14739115,
14739299-14739668,14739769-14739977,14740037-14740145,
14740257-14740378,14740873-14740979,14741393-14741447
Length = 490
Score = 31.5 bits (68), Expect = 0.58
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 337 LWHGYEIRGLENLPD-GPYLVIYYHGALPVDMYYLVARMQLFKQTQIHTVADRFMF 501
L +G +RGL +PD GP L + YH + +++ L K+T +A +F
Sbjct: 215 LKNGKIVRGLTGVPDQGPVLFVGYHALMGIELSPLYEEFLREKRTSFRGMAHPILF 270
>09_04_0689 -
19480409-19480599,19480780-19480889,19481032-19481117,
19481410-19481523,19481697-19482066,19482216-19482346,
19482628-19482736,19482901-19483022,19483113-19483219,
19483447-19483551,19483654-19483812,19484071-19484126,
19484200-19484251,19486724-19486821,19487086-19487210
Length = 644
Score = 31.1 bits (67), Expect = 0.77
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Frame = +1
Query: 346 GYEIRGLENLP-DGPYLVIYYHGALPVDMYYLVARMQLFKQTQIHTVADRFMF-----RI 507
G +RGL LP GP +++ YH L ++ LV + I +A FMF +I
Sbjct: 372 GKIVRGLSGLPKQGPAVIVGYHMLLGFELGPLVTGVLRSSGIHIRGLAHPFMFDKKKEKI 431
Query: 508 ---PGWSMLLENLCVIPGTVQTCASVLKNGNSLAISPGGVYEA 627
P + + + +P T +L + + + PGG EA
Sbjct: 432 MPDPSYYDMHRIMGAVPVTAGNFYKLLAEKHFVLLYPGGAREA 474
>06_03_0611 -
22721977-22722276,22722765-22722853,22722978-22723083,
22723178-22723306,22723803-22723887,22723994-22724103,
22724424-22724624,22725033-22725394,22725612-22725695,
22725791-22725916,22725999-22726161,22726378-22726536,
22727147-22727274,22727371-22727493,22727755-22727899,
22727992-22728068,22728318-22728696,22729325-22729411
Length = 950
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 364 LENLPDGPYLVIYYHGALPVDMYYLV 441
+ L DGPY +IYY L + M YLV
Sbjct: 386 MHGLGDGPYWIIYYAYFLILSMVYLV 411
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Frame = +3
Query: 60 FCANRHFYRRFLR--WT--FLFGICGHRV---QFVADLVPDAGHRDLPTSSSHYHPHIFK 218
+C +RHF RR R W +FG G + P AGHR P H H F
Sbjct: 113 YCGHRHFRRRRRRRQWDGRLVFGSSGASACCDRSAPPFPPRAGHRRRPRLHRHRHDLPFH 172
Query: 219 QYHLPLIQAL 248
L + A+
Sbjct: 173 ALRLDTMAAI 182
>12_01_0539 - 4245733-4246149,4246406-4246519
Length = 176
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 328 HGWLWHGYEIRGLENLPDGPYLVIYYHGALPVD 426
HG++ GY + G+ +P+ LV YH D
Sbjct: 118 HGFVDGGYRLNGIHGIPEHGTLVAIYHSQPTAD 150
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 453 LHSCDEIIHIDRQSSVIVDNEIRTVWQVLQPANLVT 346
+ C EI+H DR +I + + W + ANL+T
Sbjct: 194 IQQCREILHRDRCLVIIDEVHSKEDWDSITDANLIT 229
>04_04_0081 + 22601090-22601395,22601714-22602522,22602584-22602611
Length = 380
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 478 TVADRFMFRIPGWSMLLE-NLCVIPGTVQTCASV 576
T+ + F RIPGW + L +PGT+ S+
Sbjct: 136 TITNYFTNRIPGWGWRVSLGLAAVPGTIIVAGSL 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,698,059
Number of Sequences: 37544
Number of extensions: 339237
Number of successful extensions: 862
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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