Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K05
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      27   0.15 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   4.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 147 DLVPDAGHRDLPTSSSHYHPH 209
           DL     HRDLP   SH+H H
Sbjct: 57  DLSSPPEHRDLPIYQSHHHLH 77


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 10   YIMSDLLKRFDYETTNDFV 66
            Y +  L   FD+++TNDFV
Sbjct: 1592 YSVRGLCGNFDHDSTNDFV 1610


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 550 GTVQTCASVLKNGNSLAISPG 612
           GT QT   V  NG+ L + PG
Sbjct: 85  GTYQTSVVVTHNGSCLYVPPG 105


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 550 GTVQTCASVLKNGNSLAISPG 612
           GT QT   V  NG+ L + PG
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPG 173


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 550 GTVQTCASVLKNGNSLAISPG 612
           GT QT   V  NG+ L + PG
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPG 173


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 315 TMGCTRLAMAWLRDSRAGEPA 377
           T G   L+++WL+D RA  P+
Sbjct: 635 TRGDLPLSISWLKDGRAMGPS 655


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 171 RDLPTSSSHYHPH 209
           RD   SS+H HPH
Sbjct: 637 RDASLSSTHSHPH 649


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -1

Query: 489 VSYSMDLSLLE*LHSCDEIIHIDRQSSVIVDNEIRTVWQVLQPANLVT 346
           + YS+ LSLL     C   +H   + S + D  I T   V+      T
Sbjct: 1   MKYSILLSLLITCLICSPSVHCGTRPSFVSDEMIATAASVVNACQTQT 48


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -1

Query: 207 EDDNDCWK*EGHDDRRQEPGQPQTVLCVHIFQIKKSN 97
           EDD+D    +  DD     G+P   +   +F +++++
Sbjct: 391 EDDDDDGDDDDDDDVEAANGKPAEGMLTDVFHVQETD 427


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 499 FRIPGWSMLLENLCVIPGTVQTCASVLKNGNSLAI-SPGGVY 621
           F   G+   L+N  ++   VQ C  + K  N+L + +  GV+
Sbjct: 786 FHESGFMESLDNHWILRSNVQQCEQLEKAPNTLGLKNMAGVF 827


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,823
Number of Sequences: 438
Number of extensions: 3323
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)