Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K03
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    29   0.23 
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    27   0.91 
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    27   1.2  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    27   1.2  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   3.7  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   4.9  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    24   6.4  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    24   6.4  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   6.4  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    24   8.5  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    24   8.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    24   8.5  

>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 1    RVCVQCVLLRKKMCNM-CTRDVTVEAPLPPPKPKVNRTLERM 123
            R+ +Q V+LR KMC M   +DV  +A  PP    + R LE++
Sbjct: 1050 RLNLQEVVLRVKMCQMGDVQDVLGKALDPPSSTNIIRALEKL 1091


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 100 VNRTLERMKL-KHNIITNPISAEKQKEVEYQPDLLAVSSTIYENRI-RALQAGTRAVTRE 273
           V+R    M+L K NI+ + + A K     Y+  L     T+ EN+I + L  GT+ +   
Sbjct: 95  VSRKNRHMQLIKKNILEHDLQARKANLESYRAKLEKEYKTLAENKIQQRLSDGTKQLVTI 154

Query: 274 QGI 282
            G+
Sbjct: 155 DGL 157


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 34  KMCNMCTRDVTVEAPLPPPKPKVNRTLERMKLKHNIITNPISAEKQKEVE 183
           KMC  C   +    P   P P  N+ L + K +     +   A+ ++EV+
Sbjct: 37  KMCESCVDRIFTTGPAQCPTPGCNKILRKAKFREQTFED---AQIEREVD 83


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
            SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +1

Query: 40   CNMCTRDVTVEAPLPPPKPKVNRTLERMKLKHNIITNPISAEKQKEVEYQPDLLAVSSTI 219
            C++   ++   +P+PP +P  N  L   K + ++       +KQ+ V   P+  A  + I
Sbjct: 825  CDLLIAELLGPSPVPPSRPSANPYLLYQKTQWHVCKTLADQDKQR-VTGDPEARATKNEI 883


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 271 EQGICHSYEDPATVPRGVSGVSAIS 345
           E+ +  SY+ PA+ PR  S VS++S
Sbjct: 269 ERSVSRSYQSPASTPR--SSVSSVS 291


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 67  VEAPLPPPKPKVNRTLERMKLKHNIITNPISAEKQKE 177
           ++ P+   K K+ RT+ ++K+   +  NP+S+   +E
Sbjct: 767 IKLPVATSK-KLTRTISQLKIMRTLSGNPVSSLSSQE 802


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 25  LRKKMCNMCTRDVTVEAPLPPPKPKVNRTL 114
           L K +   C R   V++P  PP PK N  L
Sbjct: 311 LAKLVATQCHRLWLVQSPSCPPSPKNNAHL 340


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 79  LPPPKPKVNRTLERMKLKHNIITNPISAEKQKE 177
           LP P  ++ + L++   K   IT   S ++QKE
Sbjct: 421 LPKPSKEMKKKLKKSPPKRKRITTRASYDRQKE 453


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 67  VEAPLPPPKPKVNRTLERMKLKHNIITNPISAEKQKEVEYQPDL 198
           V+ P PP  PK  R   R     + +++P S     +   +P+L
Sbjct: 219 VKKPPPPAPPKPRRLAARTSSNSSGVSSPTSVPPPVQRNTRPNL 262


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 160 AEKQKEVEYQPDLLAVSSTIYENRIRALQA 249
           AE +K+++   D ++V  T+Y+ +   LQA
Sbjct: 90  AEMEKQIQELKDEVSVVKTLYKEKCIELQA 119


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 233 YELFKQALVRLQESKAYVIATKTP 304
           YEL KQA     +  A+VIA  TP
Sbjct: 668 YELSKQACFSRLQKFAFVIAQPTP 691


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
 Frame = +1

Query: 43  NMCTRDVTVEAPLPPPKPKVNRTLERMKLKHNIITNPISAEKQKEVEYQPDLLAVSSTIY 222
           N+  R +    P+P P+P     +E ++    +I+  +          +P L  VS+   
Sbjct: 260 NIGDRSLETPPPIPSPRPPQPVAVEAIQQSRAVISQQLPLHVSPRKPPKPPLRKVSTQRS 319

Query: 223 ENRIR--ALQAGTRAVTREQGICHSYEDPAT 309
            + I   A ++    VT  Q   +++  PA+
Sbjct: 320 SSPIENLATKSDASLVTGLQSSPYTHIAPAS 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,917
Number of Sequences: 5004
Number of extensions: 20235
Number of successful extensions: 57
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)