Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_K03
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   3.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   3.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   3.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   8.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   8.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 58  RVYTYCTFFSLTV 20
           R  TYC  FSL+V
Sbjct: 536 RAETYCNLFSLSV 548


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 58  RVYTYCTFFSLTV 20
           R  TYC  FSL+V
Sbjct: 504 RAETYCNLFSLSV 516


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 52  TRDVTVEAPLPPPKPKVNRTLERMKLKHNIITNPISAEKQKEV 180
           TRDV +       +  + R ++++K         +SAE++K V
Sbjct: 419 TRDVILVGEQARAQDGLRRRMDKLKSSIEEANLAVSAEREKNV 461


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 67  VEAPLPPPKP 96
           ++ PLPPP P
Sbjct: 371 LDEPLPPPPP 380


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -1

Query: 267 CNRTSACLKSSYPIFVYCARYG 202
           CN  + CL S     VYC   G
Sbjct: 143 CNFKAYCLFSFLNTIVYCVPAG 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,960
Number of Sequences: 438
Number of extensions: 1615
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)