Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_K02
(427 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 31 0.29
05_01_0149 + 989698-991797 31 0.39
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340 30 0.90
08_02_0416 + 16902153-16902430,16903089-16903143,16903174-169032... 29 1.2
06_03_0830 + 25159758-25162460 29 1.6
03_02_0583 + 9635002-9637299 29 1.6
02_01_0654 + 4860897-4860932,4860973-4861161,4861394-4861597,486... 27 6.3
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 27 8.3
05_01_0147 - 981697-983739 27 8.3
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 27 8.3
02_04_0367 + 22399785-22399899,22400911-22401102,22401990-224021... 27 8.3
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 31.5 bits (68), Expect = 0.29
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +1
Query: 190 FTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTC-NQLLTDDIS 339
FT ++N G D+ ++Q+ D+ +G+ P K C+VTC N+ +T+DI+
Sbjct: 124 FTLGYARLNITGC-DFDIYQVLDQ----SGNVPAKLCNVTCPNRGITEDIA 169
>05_01_0149 + 989698-991797
Length = 699
Score = 31.1 bits (67), Expect = 0.39
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 248 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 349
RS TNTG P + R+ T +V + L T+ W+L
Sbjct: 401 RSFTNTGRMPELFVMRLGTIMVTGFILATIFWRL 434
>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
Length = 369
Score = 29.9 bits (64), Expect = 0.90
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 318 LITSHVAILSRSG---PGAAPVFVIDLEEAVVSRSVLIHFTNFVGKPSAFVLDKADPVTH 148
++ +A+L G G A + V+ E V+R+ + HF KP +++ D A PV+
Sbjct: 81 MVVVDLAVLEGHGLEEEGDAELLVLRSGEWTVTRAPVAHFVGRADKPPSWITDMAIPVSE 140
Query: 147 Q 145
+
Sbjct: 141 R 141
>08_02_0416 +
16902153-16902430,16903089-16903143,16903174-16903232,
16903565-16903655
Length = 160
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 424 SMLTSDFSIRTKRQTCGVCKSSLRT 350
+M+ + ++ T+ QTCG K SLRT
Sbjct: 80 AMVATPHTVETQHQTCGAVKQSLRT 104
>06_03_0830 + 25159758-25162460
Length = 900
Score = 29.1 bits (62), Expect = 1.6
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 169 VENESGRFTDKIGKVNKNGSRDYGLFQINDKYWCSTGSTPGKDCHVTCNQLLTDDISVAA 348
+ ++SG F+ K + K G D Q ++ C T ST + L+ I+VAA
Sbjct: 482 ITDDSGTFSRKHTRSMKLGGIDLNENQCTEEVDCHTKSTLSNSIN------LSTPIAVAA 535
Query: 349 TCAKKIY-KRHKFDAWYGWKNHLST 420
+ ++ R F+ GWK +T
Sbjct: 536 SRTSSVFPARLHFEGELGWKGSAAT 560
>03_02_0583 + 9635002-9637299
Length = 765
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 248 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 349
R+ TNT P L R+AT +V ++ L T+ W+L
Sbjct: 466 RAFTNTRRTPELFLIRLATVVVTAFILATVFWRL 499
>02_01_0654 +
4860897-4860932,4860973-4861161,4861394-4861597,
4862503-4862604
Length = 176
Score = 27.1 bits (57), Expect = 6.3
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 333 VVSQ*LITSHVAILSRSGPGAAPVFVIDLEEAVVSRSVLIHFTNFVGKPSAFVL 172
+V++ L TS V + PG +PV +D+ +V S I ++F+G S+ L
Sbjct: 111 LVAKALTTSAVPYYQATSPGQSPVLALDV--FLVQASANIILSHFLGLASSLEL 162
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 106 LVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVNKNG 225
L +LR G +L W C VE + F +G KNG
Sbjct: 352 LCHKLRSMG---ALRDTWHCTVEEQIAMFLTTVGHHKKNG 388
>05_01_0147 - 981697-983739
Length = 680
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 248 RSMTNTGAAPGPLLERIAT*LVISY*LTTLAWQL 349
R+ TNT P + R+ T +V + L T+ W+L
Sbjct: 382 RAFTNTRRMPELFVMRLGTIMVTGFILATIFWRL 415
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 288 RSGPGAAPVFVIDLEEAVVSRSVLIHFTNFVGKPSAFVLDKADP 157
+S G P L ++ +S LI + +GKP AF D DP
Sbjct: 256 KSFVGKGPPKSGQLRSGLIGKSGLIGLSGPIGKPGAFDDDDDDP 299
>02_04_0367 +
22399785-22399899,22400911-22401102,22401990-22402117,
22402229-22402384,22402948-22403206,22403762-22403836,
22404288-22404610,22405041-22405274,22405355-22405542,
22405734-22405869,22405963-22406071,22406988-22407090,
22407188-22407374,22407467-22407565,22407666-22407724,
22408581-22408686,22408798-22408962
Length = 877
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 178 RSRQGRPSYSSNFHRSLVF*APALIRIW*NVSHRNAKR 65
R+ + P +S F +VF A + I +W + SHR+ +
Sbjct: 587 RANKRDPQFSKLFFVQVVFVAISSIMVWISTSHRSQNK 624
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,496,067
Number of Sequences: 37544
Number of extensions: 217793
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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