Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_J24
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 42 2e-05
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 42 3e-05
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 38 5e-04
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.027
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 28 0.33
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 27 0.77
SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce... 25 2.3
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 2.3
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 25 4.1
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 24 5.4
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 24 5.4
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 24 7.1
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 24 7.1
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 24 7.1
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 23 9.4
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 23 9.4
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 23 9.4
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 23 9.4
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 23 9.4
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 42.3 bits (95), Expect = 2e-05
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +1
Query: 97 SQTLPAV-----PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKELFKRAEQYVKEYR 261
S T+P+V PES+ +++SA KKR+ + KRAE Y EYR
Sbjct: 4 SSTVPSVASIFAPESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYR 63
Query: 262 IKERDEIRLAR 294
ER++I LAR
Sbjct: 64 AAEREQIELAR 74
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 41.9 bits (94), Expect = 3e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +1
Query: 184 LKRRSASIKKRKELFKRAEQYVKEYRIKERDEIRLAR 294
+ ++ A K RKE FKRAE ++ YR +ER+ IRL R
Sbjct: 37 IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNR 73
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 37.5 bits (83), Expect = 5e-04
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 118 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKELFKRAEQYVKEYRIKERDEIRLAR 294
PES+ ++++A KKR+ + KRAE Y EYR ER++I L R
Sbjct: 17 PESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAEREQIELGR 75
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 31.9 bits (69), Expect = 0.027
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 155 HSELAVFRSHSRGVPLPLRRGKNSLREPNNMSKNTASRSVMKSDW 289
++E F+ S P LR+GKN+ +P+ +S N S + + W
Sbjct: 52 NNEYQSFQHSSTSQPSVLRQGKNAFLKPSQLSFNMNSSEISNTHW 96
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 28.3 bits (60), Expect = 0.33
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 49 KRSAAAEKKPVKGKEDSQTLPAV 117
KRS AA +P K EDSQ +PAV
Sbjct: 43 KRSNAAIIEPPKNPEDSQIIPAV 65
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.1 bits (57), Expect = 0.77
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +1
Query: 67 EKKPVKGKEDSQTLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKELFKRAEQY 246
EKKP +G ED++ PA PE + + + K R +LF R ++
Sbjct: 56 EKKPAEGDEDAE--PASPE---VHFEPIVKLSAVETKTNEEEETVEFKMRAKLF-RFDKA 109
Query: 247 VKEYRIKERDEIRLARH 297
E++ + + RL +H
Sbjct: 110 ASEWKERGTGDARLLKH 126
>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 178
Score = 25.4 bits (53), Expect = 2.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 220 ELFKRAEQYVKEYRIKERDEIRLARHG 300
+L A+ +KEY K RDE+ ++R G
Sbjct: 40 DLHTFADGLMKEYGFKNRDEVVVSRKG 66
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 2.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +2
Query: 158 SELAVFRSHSRGVPLPLRRGKNSLREPNNMSKNTASRSVMKSDWQDMARNR 310
SE RS G P P+R+G + + + +S+ +S+ SD++ A +
Sbjct: 20 SESPSSRSIGSGTPAPVRKGLSKFKN-SFLSRKNSSQIKSPSDYKSSAHEQ 69
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 24.6 bits (51), Expect = 4.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 193 RSASIKKRKELFKRAEQYVKEYRIKERDEIRL 288
R S K ++E +R +QYV E E+D+I +
Sbjct: 67 RGISFKLQEEERERKDQYVPEVSELEKDKINV 98
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 5.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 201 SGTPLECDLKTASSECLPPFTVLQ 130
S PLE DL+ +ECL P ++Q
Sbjct: 187 SSDPLE-DLRLTLTECLNPINIVQ 209
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 115 QLATSDCPLYPSQVFSRPQHFFSVVATIVLWD 20
+L + C LY S + SVV TIVL++
Sbjct: 58 ELQNALCELYLSSATTNDSSLLSVVPTIVLFE 89
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 275 SRSLMRYSLTYCSALLKSSFLFLM 204
SR+L R L+YC L S +LM
Sbjct: 380 SRNLERVHLSYCIGLTAKSVSYLM 403
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 175 EDGELGVPPSFYGASRLIPEQLA 107
ED L +PP G +L PE++A
Sbjct: 178 EDELLELPPETSGRKKLTPEEMA 200
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 23.8 bits (49), Expect = 7.1
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 7 PRGVYPTARWLRLQKRSAAAEKKPVKGKED-SQTLPAVP 120
P ++ + + QK+SAA E KP K D QT A P
Sbjct: 209 PEELFASLKKSASQKKSAAKESKPKKVLLDIEQTFTARP 247
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 23.4 bits (48), Expect = 9.4
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 SRGVPLPLRRGKNSL-REPNNMSKNTASRSVMKSD 286
++G+ L G ++L REP ++ +NTA VM D
Sbjct: 400 AQGILAGLNAGLSALGREPVDIPRNTALLGVMVDD 434
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 23.4 bits (48), Expect = 9.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = -3
Query: 320 NNGHGYEPCLANLISSRSLMRYSL---TYCSA 234
NN + CLA I RSL R L T CS+
Sbjct: 572 NNNESFAVCLACAIIQRSLERKKLSTPTQCSS 603
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 23.4 bits (48), Expect = 9.4
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = -3
Query: 320 NNGHGYEPCLANLISSRSLMRYSL---TYCSA 234
NN + CLA I RSL R L T CS+
Sbjct: 572 NNNESFAVCLACAIIQRSLERKKLSTPTQCSS 603
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 23.4 bits (48), Expect = 9.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 199 ASIKKRKELFKRAEQYVKEYRIKERDEIRLARHGS*PW 312
+++KKR RA QY E + RL R+ W
Sbjct: 5 STLKKRLAACNRASQYKLETSLNPMPTFRLLRNTKWSW 42
>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1150
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 217 KELFKRAEQYVKEYRIKERD 276
KEL+KR E+ + + + ER+
Sbjct: 1063 KELYKRCEEIISQMSLDERN 1082
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,944
Number of Sequences: 5004
Number of extensions: 24943
Number of successful extensions: 93
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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