Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_J24
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 40 5e-04
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 38 0.003
01_06_0005 - 25514039-25514137,25514508-25514570,25514937-255150... 29 0.71
06_03_1494 + 30554997-30555608,30555707-30555915,30556006-305561... 27 3.8
08_02_0588 + 19036509-19039235 27 5.0
04_01_0573 + 7436146-7436701,7436786-7437204 27 5.0
01_01_0733 - 5715719-5715785,5715908-5715966,5717844-5717884,571... 27 5.0
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 26 6.6
05_03_0084 + 8266564-8266699,8267497-8267685,8267772-8267911,826... 26 6.6
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 26 8.7
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 26 8.7
07_03_0109 + 13502604-13503059,13503729-13504682 26 8.7
06_01_0216 - 1641914-1642381,1642471-1642725 26 8.7
01_05_0599 - 23550663-23550849,23553236-23553417 26 8.7
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 39.9 bits (89), Expect = 5e-04
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 115 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKELFKRAEQYVKEYRIKERDEIRLAR 294
VPESV + + + SI+ RK +F RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 37.5 bits (83), Expect = 0.003
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 115 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKELFKRAEQYVKEYRIKERDEIRLAR 294
VPESV + L + +++ RK +F RA+QY +EY +E++ ++L R
Sbjct: 11 VPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKR 70
>01_06_0005 -
25514039-25514137,25514508-25514570,25514937-25515047,
25515843-25516103,25516293-25516338,25516504-25516904
Length = 326
Score = 29.5 bits (63), Expect = 0.71
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 332 HRAHNNGHGYEPCLANLISSRSLMRYSLTYCSALLKSSFLFLM 204
HRA G G LA ++++ RYS C +L + F+ L+
Sbjct: 37 HRAAGRGRGLRHRLAAVVAAAFTARYSAQRCLVVLLTRFVLLL 79
>06_03_1494 +
30554997-30555608,30555707-30555915,30556006-30556155,
30556254-30556312,30556852-30556961,30557216-30557322,
30557443-30557581,30557705-30557821,30557918-30558025,
30558221-30558292,30558783-30558948,30559044-30559165,
30559245-30559382,30559462-30559604,30559699-30559761,
30560107-30560170,30560238-30560373,30560478-30560551,
30560640-30560734,30560829-30560860,30560973-30561175
Length = 972
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 154 PPSFYGASRLIPEQLATSDCPLYPSQVFSRPQ 59
P +YG S + PE L D P P S P+
Sbjct: 91 PQHYYGPSAIAPELLQAMDAPHEPPANVSSPE 122
>08_02_0588 + 19036509-19039235
Length = 908
Score = 26.6 bits (56), Expect = 5.0
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 3 RAAWSLSHSTMVATTEK--KCCGRE-KTCEG*RGQSDVASCSGISLEAP*KEGG 155
+AA L MV+ T + CGR+ KT G + ASC G+S E +GG
Sbjct: 433 QAANVLPKRRMVSATRRFPPGCGRDVKTGSGLEFMAVDASCGGVSKEVVASDGG 486
>04_01_0573 + 7436146-7436701,7436786-7437204
Length = 324
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 3 RAAWSLSHSTMVATTEKKCCGREKTC 80
R AW+LS + + AT+ + G K C
Sbjct: 40 RLAWNLSRNVVEATSSRAILGERKLC 65
>01_01_0733 -
5715719-5715785,5715908-5715966,5717844-5717884,
5718086-5718134,5718427-5718559,5719303-5719384,
5719990-5720472,5720612-5721024,5721260-5721419,
5721541-5721665,5721756-5721811,5721831-5721889,
5722069-5722180,5722952-5723032
Length = 639
Score = 26.6 bits (56), Expect = 5.0
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 54 KCC-GREKTCEG*RGQSDVASCSGISLEAP*KEGGTPSSPSSDHTQE 191
KCC GR ++ E S+ S SGI+L+ G P+ DH E
Sbjct: 429 KCCIGRTESPECKTKSSNTVSHSGITLKEK-NNGPPPNDNKQDHAAE 474
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 40 RLQKRSAAAEKKPVKGKEDSQTLPAVPES 126
RL + A E+KP D LPA P +
Sbjct: 426 RLAREQVAVERKPAASHVDKSRLPAQPSA 454
>05_03_0084 +
8266564-8266699,8267497-8267685,8267772-8267911,
8268130-8268225,8268327-8268388,8268559-8268634,
8268709-8268785,8268866-8268899,8268983-8269132,
8269222-8269356,8269450-8269533
Length = 392
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 293 LANLISSRSLMRYSL-TYCSALLKSSFLFL 207
LAN I+ SL+ YSL Y +L+ +S +FL
Sbjct: 279 LANYIAELSLLEYSLICYVPSLIAASSIFL 308
>11_01_0656 -
5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 136 ASRLIPEQLATSDCPLYPSQV 74
A++L PEQL + CPL P ++
Sbjct: 270 ANQLRPEQLIVNGCPLGPDEL 290
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 90 RGQSDVASCSGISLEAP*KEGGTPSSPSSDHTQEAFRFH 206
R +++ CS +S++AP E P + S+ + +E H
Sbjct: 1303 RNENEAGPCSSMSVDAPMTEAPEPVNVSNHNIEEQNSCH 1341
>07_03_0109 + 13502604-13503059,13503729-13504682
Length = 469
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 178 SEDGELGVPPSFYGASRLIPEQLAT 104
S + E VPP +YG + L P AT
Sbjct: 317 SREEEAAVPPGYYGNAHLSPMVTAT 341
>06_01_0216 - 1641914-1642381,1642471-1642725
Length = 240
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 10 RGVYPTARWLRLQKRSAAAEKKPVKGKEDSQTLP 111
+GV A+ R + SAAA KKP E + +P
Sbjct: 169 KGVVGGAKRKRTPRPSAAAAKKPASSAEAKKAVP 202
>01_05_0599 - 23550663-23550849,23553236-23553417
Length = 122
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 14 EFIPQHDGCDYRKEVLRPRKNL*RVKRTVRRCQLFRNQ 127
E + +H GC Y KEV+ K TV +CQ Q
Sbjct: 17 ELVSKH-GCAYYKEVMEKNKQHVVQPPTVEKCQELSKQ 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,009,992
Number of Sequences: 37544
Number of extensions: 183833
Number of successful extensions: 563
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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