Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J24
         (337 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    41   2e-04
Z79758-1|CAB61037.1|  340|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical ...    28   1.4  
Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical p...    28   1.9  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    28   1.9  
Z81519-2|CAB04217.1|  468|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    26   5.8  
U41014-1|AAK32947.3|  641|Caenorhabditis elegans Hypothetical pr...    26   5.8  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      26   5.8  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    26   5.8  
Z83228-3|CAB60998.1|  536|Caenorhabditis elegans Hypothetical pr...    26   7.7  
Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical pr...    26   7.7  
Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    26   7.7  
Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical pr...    26   7.7  
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    26   7.7  
AF145377-1|AAD39816.1|  536|Caenorhabditis elegans MOM-4 protein.      26   7.7  
AF143242-1|AAD37359.1|  536|Caenorhabditis elegans protein kinas...    26   7.7  
AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical ...    26   7.7  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 20/66 (30%), Positives = 36/66 (54%)
 Frame = +1

Query: 97  SQTLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKELFKRAEQYVKEYRIKERD 276
           ++ +P VPE+V               Q  +   + + +K+ + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 277 EIRLAR 294
            +RL R
Sbjct: 64  GLRLKR 69


>Z79758-1|CAB61037.1|  340|Caenorhabditis elegans Hypothetical
           protein W10D5.1 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -1

Query: 178 SEDGELGVPPSF---YGASRLIPEQLATSDCPLYPSQVFSRPQHFFS 47
           S    L  PPS    Y  SRL P   A +DC L PS   +  Q+ +S
Sbjct: 209 SSSKHLDFPPSTSFAYDTSRLHPIAAADADCDLVPSSRAAADQNIWS 255


>AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical
           protein F27B3.7 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +2

Query: 194 VPLPLRRGKN-----SLREPNNMSKNTASRSVMKSD 286
           +PL +RR  N     S+ +P N+  NTA  ++M SD
Sbjct: 25  IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60


>Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical
           protein F36G9.1 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 282 DFITL-LDAVFFDILFGSLKEFFPLLNGS 199
           DF++L     FF ILFG+  EF  L+NG+
Sbjct: 295 DFLSLGYRLAFFIILFGAFCEFVSLINGT 323


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = +2

Query: 194 VPLPLRRGKN-----SLREPNNMSKNTASRSVMKSD 286
           +PL LRR  N     SL +P N++ +T   +++KSD
Sbjct: 25  IPLELRRNLNLSKLESLVDPRNLADDTVLEAILKSD 60


>Z81519-2|CAB04217.1|  468|Caenorhabditis elegans Hypothetical
           protein F29C12.5 protein.
          Length = 468

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 213 LLNGSGTPLECDLKTASSECL 151
           L+ GSG P+E  L  A  ECL
Sbjct: 240 LIEGSGKPMEIRLDIAEKECL 260


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
           protein C05C12.3 protein.
          Length = 1694

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 209 RRGKNSLREPNNMSKNTASRSVMKSDWQDM 298
           RR K      +    N+A R V K DW+DM
Sbjct: 43  RRKKQRSTSSDKAPLNSAPRHVQKFDWKDM 72


>U41014-1|AAK32947.3|  641|Caenorhabditis elegans Hypothetical
           protein C06G1.4 protein.
          Length = 641

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 233 EPNNMSKNTASRSVMKSDWQDMARNRGHYYVPGE 334
           +PNN SK+ ++     + W D+   +  +Y+P +
Sbjct: 444 DPNNPSKSESTIFDENNRWNDLTTEQNPWYLPNQ 477


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 209 RRGKNSLREPNNMSKNTASRSVMKSDWQDM 298
           RR K      +    N+A R V K DW+DM
Sbjct: 43  RRKKQRSTSSDKAPLNSAPRHVQKFDWKDM 72


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1681

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 209 RRGKNSLREPNNMSKNTASRSVMKSDWQDM 298
           RR K      +    N+A R V K DW+DM
Sbjct: 30  RRKKQRSTSSDKAPLNSAPRHVQKFDWKDM 59


>Z83228-3|CAB60998.1|  536|Caenorhabditis elegans Hypothetical
           protein F52F12.3 protein.
          Length = 536

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 180 DLKTASSECLPPFTVLQD*FRN 115
           D++  SSEC+  FT+L+D + N
Sbjct: 291 DIRPTSSECVEYFTLLKDEYPN 312


>Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 145 FYGASRLIPEQLATSDCPL 89
           ++G++ L+P+ LA  DC L
Sbjct: 165 YFGSNNLVPQNLAIHDCEL 183


>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 199 ASIKKRKELFKRAEQYVKEYRIKERDEI 282
           +SI+++ E  ++ +Q  KEYR+K   E+
Sbjct: 65  SSIEQKTEGSEKKQQLAKEYRVKVEQEL 92


>Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 145 FYGASRLIPEQLATSDCPL 89
           ++G++ L+P+ LA  DC L
Sbjct: 165 YFGSNNLVPQNLAIHDCEL 183


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 199 ASIKKRKELFKRAEQYVKEYRIKERDEI 282
           +SI+++ E  ++ +Q  KEYR+K   E+
Sbjct: 65  SSIEQKTEGSEKKQQLAKEYRVKVEQEL 92


>AF145377-1|AAD39816.1|  536|Caenorhabditis elegans MOM-4 protein.
          Length = 536

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 180 DLKTASSECLPPFTVLQD*FRN 115
           D++  SSEC+  FT+L+D + N
Sbjct: 291 DIRPTSSECVEYFTLLKDEYPN 312


>AF143242-1|AAD37359.1|  536|Caenorhabditis elegans protein kinase
           MOM-4 protein.
          Length = 536

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 180 DLKTASSECLPPFTVLQD*FRN 115
           D++  SSEC+  FT+L+D + N
Sbjct: 291 DIRPTSSECVEYFTLLKDEYPN 312


>AF022981-4|AAG24205.1|  602|Caenorhabditis elegans Hypothetical
           protein W03F9.10 protein.
          Length = 602

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 184 LKRRSASIKKRKELFKRAEQYVKEYRIKERDE 279
           LKR+    KK+KE  KRA+   K+  I+ R+E
Sbjct: 25  LKRKQQKSKKKKESKKRAKA-TKQAEIETREE 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,177,192
Number of Sequences: 27780
Number of extensions: 149653
Number of successful extensions: 674
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)