Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J21
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    42   3e-04
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    42   3e-04
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    41   4e-04
Z32679-8|CAM33498.1|  119|Caenorhabditis elegans Hypothetical pr...    32   0.19 
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    32   0.19 
U23451-2|AAC46746.1|  107|Caenorhabditis elegans Insulin related...    29   2.4  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z73428-2|CAA97806.2|  572|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = -3

Query: 485 NCATQSNPSLSIVHPGPCDNRVKVVENQPESNKV-IVVDNNNAPSC-ACTRNLEPVCASN 312
           +C T+S   + + H G C   V    +  +  +V +VVD      C +CT   + VC S+
Sbjct: 422 SCETKS--MIKVKHQGTCGIGVCATFDSCKKPQVCVVVDGKPKCVCPSCTDEFKEVCGSD 479

Query: 311 GVTYNNECMMR---CHGGDHLTVVTHEPCNA*K 222
           G TY+NEC ++   C    ++ V  +  C A K
Sbjct: 480 GKTYSNECRLQNAACMAQKNIFVKYNSACEACK 512



 Score = 35.1 bits (77), Expect = 0.027
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -3

Query: 380 VVDNNNAPSCACTRNLE----PVCASNGVTYNNECMMR 279
           VV  +    C C    E    PVCA+NG T++NEC M+
Sbjct: 382 VVKPDRTAECECPNRCEDVMRPVCATNGETFDNECEMK 419



 Score = 32.7 bits (71), Expect = 0.15
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 359 PSCACTRNLEPVCASNGVTYNNEC 288
           P+C  + N  P+C S+G+ YNN+C
Sbjct: 684 PTCNLSSNY-PICGSDGIVYNNQC 706



 Score = 31.9 bits (69), Expect = 0.25
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
 Frame = -3

Query: 485 NCATQSNPSLSIVHPGPCDNRVKVVENQPESNKVIVVDNNNAPSCACTRNL--------E 330
           N A  +  ++ + +   C+   K+ + + +     VV  N    C C  +         +
Sbjct: 491 NAACMAQKNIFVKYNSACE-ACKLKKEKCDFYSACVVGENEKAECKCPDDCPSYEMEEGK 549

Query: 329 PVCASNGVTYNNECMMR---CHGGDHLTVVTHEPCN 231
            VC ++GVTY++EC M+   CH    +       C+
Sbjct: 550 EVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCD 585



 Score = 31.1 bits (67), Expect = 0.44
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 377 VDNNNAPSCA--CTRNLEPVCASNGVTYNNECMMR 279
           VD      C+  CT N   VC ++G TY NEC ++
Sbjct: 311 VDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLK 345


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = -3

Query: 485 NCATQSNPSLSIVHPGPCDNRVKVVENQPESNKV-IVVDNNNAPSC-ACTRNLEPVCASN 312
           +C T+S   + + H G C   V    +  +  +V +VVD      C +CT   + VC S+
Sbjct: 430 SCETKS--MIKVKHQGTCGIGVCATFDSCKKPQVCVVVDGKPKCVCPSCTDEFKEVCGSD 487

Query: 311 GVTYNNECMMR---CHGGDHLTVVTHEPCNA*K 222
           G TY+NEC ++   C    ++ V  +  C A K
Sbjct: 488 GKTYSNECRLQNAACMAQKNIFVKYNSACEACK 520



 Score = 35.1 bits (77), Expect = 0.027
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = -3

Query: 380 VVDNNNAPSCACTRNLE----PVCASNGVTYNNECMMR 279
           VV  +    C C    E    PVCA+NG T++NEC M+
Sbjct: 390 VVKPDRTAECECPNRCEDVMRPVCATNGETFDNECEMK 427



 Score = 31.9 bits (69), Expect = 0.25
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
 Frame = -3

Query: 485 NCATQSNPSLSIVHPGPCDNRVKVVENQPESNKVIVVDNNNAPSCACTRNL--------E 330
           N A  +  ++ + +   C+   K+ + + +     VV  N    C C  +         +
Sbjct: 499 NAACMAQKNIFVKYNSACE-ACKLKKEKCDFYSACVVGENEKAECKCPDDCPSYEMEEGK 557

Query: 329 PVCASNGVTYNNECMMR---CHGGDHLTVVTHEPCN 231
            VC ++GVTY++EC M+   CH    +       C+
Sbjct: 558 EVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCD 593



 Score = 31.1 bits (67), Expect = 0.44
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 377 VDNNNAPSCA--CTRNLEPVCASNGVTYNNECMMR 279
           VD      C+  CT N   VC ++G TY NEC ++
Sbjct: 319 VDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLK 353


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 359 PSCACTRNLEPVCASNGVTYNNECMMRC 276
           P C C   + PVC ++ VTYNN C +RC
Sbjct: 17  PDCDCPSVIRPVCGTDNVTYNNLCFLRC 44



 Score = 34.7 bits (76), Expect = 0.036
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
 Frame = -3

Query: 485 NCATQS--NPSLSIVHPGPCDNRVKVVE---NQPESNKVIVVDNNNAPSCA--CTRNLEP 327
           NC  +    P L +V  G C+  +   +   N+      I     N  +C+  C  + +P
Sbjct: 719 NCKLKKLDQPKLVVVSQGICEKDMLTDDFSSNRNFQKPNIEFKRENTFNCSMECDNSYDP 778

Query: 326 VCASNGVTYNNECMMR 279
           +C +NGVT+ N C ++
Sbjct: 779 LCGTNGVTFTNACSLQ 794



 Score = 34.3 bits (75), Expect = 0.048
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
 Frame = -3

Query: 485  NCATQSNP---SLSIVHPGPCDNRVKVVENQPESNKVIVVDN----NNAPSC--ACTRNL 333
            NC +  +P   S    H   C   VK    +     V+ +D     N    C  AC +  
Sbjct: 817  NCPSDFSPVCDSKGSTHQNICHFGVKRCIAERTFGDVLTIDKFEVCNEVKECNNACPKEY 876

Query: 332  EPVCASNGVTYNNEC 288
             PVCASNG    NEC
Sbjct: 877  SPVCASNGQNIVNEC 891



 Score = 30.3 bits (65), Expect = 0.77
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
 Frame = -3

Query: 485 NCATQSNP---SLSIVHPGPCDNRVKVVENQPESNKVIVVDNNNAPS---CA--CTRNLE 330
           NC T   P   S   +H   C+          + +++ +    N  S   C   CT +  
Sbjct: 536 NCPTDGQPVCDSAGNLHGNLCEFTYSRCIAASKGHQIHIATEENCISKEACQMPCTDDKH 595

Query: 329 PVCASNGVTYNNECMMR 279
           P+CAS+  TY N C  R
Sbjct: 596 PICASDFSTYENLCQFR 612



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
 Frame = -3

Query: 347 CTRN-LEPVCASNGVTYNNEC---MMRC 276
           CT    +PVC +NG  Y N C   M RC
Sbjct: 119 CTNTEFDPVCDTNGSVYRNLCVFQMRRC 146


>Z32679-8|CAM33498.1|  119|Caenorhabditis elegans Hypothetical
           protein C05B5.11 protein.
          Length = 119

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -3

Query: 419 KVVENQPESNKVIVVDNNNAPSCACTRNLEPVCASNGVTYNNECMMRCHGGDHLTVVTHE 240
           ++ +NQPE  +       +A + AC+ NLE  C + G+  + EC++    G + +  T  
Sbjct: 17  QIDDNQPELQRTFFGIIGSAKAKACSTNLE--CGNKGICVDGECLVDNGLGGYCSTSTQC 74

Query: 239 P 237
           P
Sbjct: 75  P 75


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -3

Query: 356 SCACTRNLEPVCASNG---VTYNNECMMRC 276
           +C+C   ++PVC   G    TY+N+C+ +C
Sbjct: 24  TCSCKPEIDPVCVREGPYQYTYSNKCVFQC 53


>U23451-2|AAC46746.1|  107|Caenorhabditis elegans Insulin related
           protein 3 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +3

Query: 408 FHNLHSVVARTRVYDAQARVRLCG 479
           FHN+HS++AR+R  D   +V++CG
Sbjct: 43  FHNIHSLMARSRRGD---KVKICG 63


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
 Frame = -3

Query: 467 NPSLSIVHPGPC-DNRVKVVE--NQPESNKVIVVDNNNAPSCACTRNLEPVCASNGVTYN 297
           +P   + HPGPC + ++   +  N  ++ K +   ++    C      E VC        
Sbjct: 332 HPCTELCHPGPCIECKLFTTKSCNCGKTKKSVRCGSDQEVMC------ETVCGKQLSCGQ 385

Query: 296 NECMMRCHGGD--HLTVVTHEPC 234
           + C   CH GD    TV+  + C
Sbjct: 386 HNCERICHSGDCGECTVILEQDC 408


>Z73428-2|CAA97806.2|  572|Caenorhabditis elegans Hypothetical
           protein M142.2 protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = -3

Query: 482 CATQSNPSLSIVHPGPCDNRVKVVENQPESNKVIVVDNNNAPSCACTRNLEPVCASNGVT 303
           C T+  P    +  GP    VK    QP    V V+D+ +   C       P   S G+T
Sbjct: 221 CKTEFRPGTPEIICGPDRIGVKASTKQPFEGNVFVMDHYHDEECRAGPEKFPDSRSIGLT 280


>AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.6 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/50 (26%), Positives = 18/50 (36%)
 Frame = -3

Query: 356 SCACTRNLEPVCASNGVTYNNECMMRCHGGDHLTVVTHEPCNA*KNQMIY 207
           SC C   ++P C+    TY       C   +   V T   C     Q+ Y
Sbjct: 28  SCGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQTSCSCAQPVQQLTY 77


>AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.3 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/50 (26%), Positives = 18/50 (36%)
 Frame = -3

Query: 356 SCACTRNLEPVCASNGVTYNNECMMRCHGGDHLTVVTHEPCNA*KNQMIY 207
           SC C   ++P C+    TY       C   +   V T   C     Q+ Y
Sbjct: 28  SCGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQTSCSCAQPVQQLTY 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,172,343
Number of Sequences: 27780
Number of extensions: 203869
Number of successful extensions: 560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)