Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J20
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    28   0.53 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    28   0.53 
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   5.0  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   5.0  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   6.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.6  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    24   8.7  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    24   8.7  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   8.7  
SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...    24   8.7  

>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 268 KHITTGAMTRVRRYELVEDATRDGYDIRDVKDALNQL 378
           KH  +      R+   ++ AT   Y IRD+ DA+N+L
Sbjct: 31  KHRASVVKDISRKISRIQSATLPEYQIRDLNDAINRL 67


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 334 DGYDIRDVKDALNQLFSGRKMEDSYSFLT 420
           + Y ++ +K+   Q  S RK ED+ +F+T
Sbjct: 2   NNYQVKAIKEKTQQYLSKRKFEDALTFIT 30


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 185 WFAALTVTSNHTAH 144
           WF  LTV  NH+AH
Sbjct: 215 WFNLLTVHQNHSAH 228


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 34  NIGLIQKNSSFILIICVVGKI 96
           N+  IQ+N S++LI+C V  I
Sbjct: 722 NLETIQQNCSYVLILCPVHPI 742


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 259  AKAKHITTGAMTRVRRYELVEDATRDGYDIR 351
            A +  I   A  R+++Y+ VED   + Y++R
Sbjct: 1025 ATSNMIAFDASGRIKKYDSVEDILTEFYEVR 1055


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -3

Query: 428 VESVRKEYESSIFRPEKS*FRASFTSLISYPSRVASSTSS 309
           + S    Y SS+  P  S   +S +SLI   S VASS+SS
Sbjct: 659 ISSSLSTYSSSVI-PSSSTLVSSSSSLIVSSSPVASSSSS 697


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 258 GEG*THHDWCYDQSSPVRAGGRCN 329
           G G TH  WC D    +  G RC+
Sbjct: 254 GNGVTHLQWCED-GEKLYVGSRCS 276


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 289 MTRVRRYELVEDATRDGYD-IRDVKDALNQLFSGRKMEDS 405
           M RVRR  L+ED+ R   D  +D + AL   F G +  D+
Sbjct: 434 MIRVRRDRLLEDSLRQINDRNKDFRKALKVEFLGEEGIDA 473


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 286 AMTRVRRYELVEDATRDGYDIRDVKDALNQL 378
           A   +  Y++ E   R+G DI  +KD+L+ L
Sbjct: 83  ANNTIYEYDIYETGFRNGGDIIGLKDSLDYL 113


>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 360 RCSKSTFLWSKNGGFILFPH 419
           +C    FL++ NG  ILF H
Sbjct: 57  KCEDRLFLYTLNGEIILFQH 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,531
Number of Sequences: 5004
Number of extensions: 28469
Number of successful extensions: 72
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)