Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J20
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical ...    29   1.4  
AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    27   4.4  

>AF039712-2|AAK21401.1|  401|Caenorhabditis elegans Hypothetical
           protein F54D7.3 protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = +1

Query: 67  ILIICVVGKIYSLFFPLF-----NGMSR*MSWAVWLLVTVSAANQVYQY 198
           +LI   + + YS+FFPL+       + R +S+A W +  V++A Q+Y +
Sbjct: 111 VLICITLDRFYSIFFPLYAMRARKSVQRMVSFA-WTISFVTSAPQLYLF 158


>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 280 TGAMTRVRRYELVEDATRDGYDIRDVKDALNQLFSGRKMEDSYSFL 417
           T  M R    E+VE AT+ GY    +   LN +    +M+D  S L
Sbjct: 109 TAPMIRYPAPEVVEFATKLGYSTEQLSHVLNTIGVDSRMDDVLSEL 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,850,457
Number of Sequences: 27780
Number of extensions: 156339
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)