Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J18
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    80   1e-16
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    40   3e-04
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    38   6e-04
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    36   0.004
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    28   0.62 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   1.1  
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3...    27   1.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   1.4  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    27   1.9  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    27   1.9  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    26   3.3  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    25   4.4  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.8  
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    25   5.8  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    25   5.8  
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    25   5.8  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   5.8  

>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 80.2 bits (189), Expect = 1e-16
 Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
 Frame = +1

Query: 190 CDVCSE-IAHEPFIECYEC-DINLCTNCFASGKEVGRHKNDHKYAV-RRNDLPLFENCNW 360
           C+VC++ I     I C EC D +LC  CF SG  +G H   H Y +   N  P+F+  NW
Sbjct: 8   CNVCAQDITRSIHIRCVECVDFDLCIPCFTSGASLGTHHPSHPYRIIETNSYPIFDE-NW 66

Query: 361 SAKEESQLLSALSTYGFGNWEDISKSV-HTRSKLECQ 468
            A EE  L+ A  T G GNW DI+  V + R+K EC+
Sbjct: 67  GADEELLLIDACETLGLGNWADIADYVGNARTKEECR 103


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 250 NLCTNCFASGKEVGRHKNDHKYAVRRNDLPLFENCNWSAKEESQLLSALSTYGFGNWEDI 429
           ++C NC+  G+      +     +   D    E   WS +E   LL A+ TYG  +W  I
Sbjct: 214 DICPNCYKQGRFSSSFNSSDFLCMDAIDFNHDEEKPWSNQETLLLLEAIETYG-DDWNQI 272

Query: 430 SKSVHTRSKLEC 465
           +  V +R+K +C
Sbjct: 273 ALHVGSRTKEQC 284


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 349  NCNWSAKEESQLLSALSTYGFGNWEDI 429
            NC+W  KE+S LL+ ++ +GFG W+ I
Sbjct: 1129 NCSWGIKEDSMLLAGINKHGFGCWQAI 1155


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 349  NCNWSAKEESQLLSALSTYGFGNWEDISKSVHTRSK 456
            +C W  +E+S LLS +  +GFG W +I      + K
Sbjct: 1120 SCQWGPREDSMLLSGICKHGFGAWLEIRDDPELKMK 1155


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 358 WSAKEESQLLSALSTYGFGNWEDI 429
           W+ KE + LL     +G GNW+ I
Sbjct: 58  WTEKETNDLLRGCQIHGVGNWKKI 81


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/49 (24%), Positives = 19/49 (38%)
 Frame = +1

Query: 184 TRCDVCSEIAHEPFIECYECDINLCTNCFASGKEVGRHKNDHKYAVRRN 330
           +RC +CSE      + C+ C I+  + C         H+      V  N
Sbjct: 709 SRCYICSESVWGSELRCFHCSISCHSRCLKRLFAESEHEKTMSETVSEN 757


>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 158

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 115 RSIFRRNLESVLRPAKMSNDILQTRCDVCSEIAH 216
           R+ FRR     L+P + S ++   RC   S++ H
Sbjct: 5   RAAFRRRTPIFLKPYEFSTNVFGLRCRYYSQVRH 38


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +1

Query: 190 CDVCSEIAHEPFIECYEC-DINLCTNCFASGKEVGRHKNDHKY 315
           CD C +  H    +C  C D ++C +C         H N H +
Sbjct: 136 CDHCEQPIHNVRYKCSVCDDYDICESCLTDNS----HSNTHAF 174


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 295 HKNDHKYAVRRNDLPLFENCNWSAKEESQLLSALST 402
           +KND  Y VR N + +F++ +    +    L+ LST
Sbjct: 443 YKNDRSYVVRNNKIGVFKHVDEKGLKFQTALNNLST 478


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 358 WSAKEESQLLSALSTYGFGNWEDISKSVHTRSKLECQ 468
           W   E+  L +A+S YG   W  IS  +  ++  +C+
Sbjct: 9   WKNTEDEILKAAVSKYGKNQWARISSLLVRKTPKQCK 45


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 155 GRRTDSRFLRKILRHRIQRM 96
           G+  +S F R++L+HR+QR+
Sbjct: 11  GQEPNSSFRRQLLQHRLQRL 30


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 178 KYHLTFSQVEELIQDFYEKYYD-IEYKGCRHALFLRLVR 65
           KYH  F Q+  LI     K++D ++ K C + +   + +
Sbjct: 582 KYHPPFEQLPLLISSLTPKFFDWLDEKSCLNGIMKAIAK 620


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 235 YECDINLCTNCFASGKEVGRHKNDH 309
           Y+CD   CT  F   +   RH   H
Sbjct: 17  YKCDFQGCTKSFTRKEHARRHFRSH 41


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 161 FAGRRTDSRFLRKILRHRIQ 102
           F  RRTDSRF + IL+   Q
Sbjct: 34  FLARRTDSRFNKAILKRLFQ 53


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
 Frame = +1

Query: 358 WSAKEESQLLSALSTYGFG-------NWEDISKSVHTRSKLECQ 468
           WS +EE+QLL  ++            NW  +++ + TR++L+C+
Sbjct: 368 WSLEEETQLLQIVAELRNREDLSSDINWTLVAQMLGTRTRLQCR 411


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 161 FAGRRTDSRFLRKILRHRIQ 102
           F  RRTDSRF + IL+   Q
Sbjct: 34  FLARRTDSRFNKAILKRLFQ 53


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 400 LKALIVTGF-LLSLTNYSFQITANRSVLLHICDHFYVSQPLFR 275
           L +L + G+ + S+  + F  T  +S++LH CD   +S+ L +
Sbjct: 188 LSSLEIRGYDIRSIFGWDFLSTTLKSLILHHCDLADLSEVLIK 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,304
Number of Sequences: 5004
Number of extensions: 41402
Number of successful extensions: 122
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)