Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J16
         (431 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6NDV8 Cluster: Restriction methylase; n=4; Alphaproteo...    35   0.64 

>UniRef50_Q6NDV8 Cluster: Restriction methylase; n=4;
           Alphaproteobacteria|Rep: Restriction methylase -
           Rhodopseudomonas palustris
          Length = 609

 Score = 35.1 bits (77), Expect = 0.64
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 169 PRLNTLFYRQKLYSHRNLFTVINALASRW*SVGVQRVYMS 288
           P    L YR+ LY H NL+ V   LA RW  VG    Y++
Sbjct: 266 PPAQRLRYRRSLYGHANLYGVFTDLALRWTKVGGVIAYVT 305


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 434,485,434
Number of Sequences: 1657284
Number of extensions: 8279865
Number of successful extensions: 15580
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15575
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21075479950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)