Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J16
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    27   1.6  
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    26   2.8  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    25   3.8  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   5.0  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    25   6.6  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   6.6  
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce...    24   8.7  

>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +2

Query: 68  LILQTDTSILV-ISKVWAFAYLKKYYYGNPVNIRVQG*IRYFTAKNFTPTEI 220
           L L+  +++++ +++VWA  Y   +   + +++RV+  + +FT+K F   +I
Sbjct: 57  LALRLSSNLMIGVTRVWAHQYSFFHSQVSTLHLRVRKELDHFTSKPFKNIDI 108


>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 383 YLHTKFQIKNSLHTKTNL 330
           Y H K QI N+ H+KT +
Sbjct: 39  YFHDKIQISNNTHSKTTV 56


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 381 SPYQISN*KFITYKNKPFLFIILV*ISANFCAHIDTLY 268
           +P  +   K +T+K +  L   LV I +NFC   +TLY
Sbjct: 154 NPKYMDQQKELTWKMREILNEWLVEIHSNFCLMPETLY 191


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 347 VMNF*FEIWYGDSLYFENP 403
           ++N+  E WY D L  ENP
Sbjct: 569 ILNWLSEEWYNDRLMLENP 587


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 143 YGNPVNIRVQG*IRYFTAKNFTP 211
           YG PV++   G I YF    +TP
Sbjct: 210 YGKPVDMWAIGVITYFLLSGYTP 232


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 368 FQIKNSLHTKTNLS 327
           F++KNSLH  T+LS
Sbjct: 149 FEVKNSLHDSTDLS 162


>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 139

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
 Frame = +2

Query: 80  TDTSILVISK-----VWAFAYLKKYYYGNPVNIRV 169
           T T IL +S+      WA   L +  YG PV IRV
Sbjct: 71  TSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRV 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,628
Number of Sequences: 5004
Number of extensions: 38450
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)