Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J16
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0068 - 19759141-19761180                                         27   4.9  
05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157     27   6.5  

>11_06_0068 - 19759141-19761180
          Length = 679

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 328 PLYNISIDKCQLLRSYRHAVHQRFTIWR 245
           P  NI  +  + LR YR+  H   T+WR
Sbjct: 296 PKMNIVAEHLRKLREYRNGGHDNTTLWR 323


>05_06_0274 - 26860573-26860783,26861125-26861202,26861671-26863157
          Length = 591

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 192 PPKTLLPQKFIYGDKCISLQMVKRWCTACLYE 287
           PP+ L P+   + DKC+  +  +RW  A L E
Sbjct: 229 PPEWLSPEANDFLDKCLRRRAGERWTAAQLLE 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,116,804
Number of Sequences: 37544
Number of extensions: 205317
Number of successful extensions: 306
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)