Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J16
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine re...    28   3.3  
AC024842-7|AAF59620.1|  457|Caenorhabditis elegans Hypothetical ...    27   5.8  

>AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine
           receptor, class h protein20 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 9/42 (21%), Positives = 24/42 (57%)
 Frame = -2

Query: 364 KLKIHYIQKQTFPLYNISIDKCQLLRSYRHAVHQRFTIWRLM 239
           ++ +H +   TFP Y +++     +++   A+++ F IW ++
Sbjct: 12  RISLHSVHLITFPTYALALFSLIFIKTKIFAIYRFFLIWHVL 53


>AC024842-7|AAF59620.1|  457|Caenorhabditis elegans Hypothetical
           protein Y59H11AR.4 protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 424 PRSSRSRGIFKVQTISIPNFKLKIHYIQKQTFPL 323
           P    S  +F+V+  S+PNF + ++ +   T PL
Sbjct: 291 PLLQASEHLFRVKHASVPNFGVVVNLVGGSTLPL 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,319,340
Number of Sequences: 27780
Number of extensions: 210518
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)