Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J14
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   1.9  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    27   2.5  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   4.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.7  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 406 SIKNLFTFAINSLPHTSVHYLEL*IITSGRHTFLVKD 296
           S+++L  F IN++  T++H L   +      TF+ KD
Sbjct: 740 SVQHLLDFDINNMDETAIHMLMNQLEKKENRTFIKKD 776


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 137 NFITRKHSFVLVLVHVGLRARSRNIK 60
           NF+ +KHS V+ ++  GL  + R+ K
Sbjct: 136 NFLMKKHSNVVTMIDFGLAKKYRDFK 161


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 182 FYLYSLFFAAYINLVNFITRKHSFVLVL 99
           F+  SL   +Y NL  FIT  H  +LVL
Sbjct: 240 FFRRSLKKVSYFNLATFITLLHHCLLVL 267


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 173  YSLFFAAYINLVNFITRKHSFVLVLVHVGLRA 78
            Y + +A  + ++ +I+R HS+++ +  VGL A
Sbjct: 2242 YIVLWALLLGVLAWISRTHSWIICVFGVGLGA 2273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,685
Number of Sequences: 5004
Number of extensions: 35383
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)