Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J14
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical...    27   7.0  

>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 351 CTLVCGREFIANVNKFFIDTFFNH-TCILESLHFLNLSFIKI*S*RLNKFYSKKK 512
           C+L  G +     N+ F++ FF+H T IL S +F++     I +   +KF  K K
Sbjct: 62  CSLEIGGKEEIFKNQNFMEFFFSHLTIILSSTNFISYLSFSIINNSTSKFLEKLK 116


>Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.2 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 182 FYLYSLFFAAYINLVNFIT-RKHSFVLVLV 96
           +Y Y+ FF A +N + FIT   H F+  +V
Sbjct: 260 YYTYTPFFNAILNSIMFITVSSHGFISTIV 289


>Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.1 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 182 FYLYSLFFAAYINLVNFIT-RKHSFVLVLV 96
           +Y Y+ FF A +N + FIT   H F+  +V
Sbjct: 260 YYTYTPFFNAILNSIMFITVSSHGFISTIV 289


>AF067211-12|AAK66018.2|  276|Caenorhabditis elegans Hypothetical
           protein B0205.11 protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 27  SASNTWILRRMFDIS*TRP---QANVNKY*DKTVFTRYEV 137
           ++ NTW+LRR+F    T P   Q N N + D   + +YEV
Sbjct: 18  ASRNTWVLRRVFQPEVTPPGGVQKNPNDFHD---YQKYEV 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,569
Number of Sequences: 27780
Number of extensions: 191858
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)