Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J13
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   111   2e-25
Z99281-17|CAB54456.2|  177|Caenorhabditis elegans Hypothetical p...    27   7.0  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    27   7.0  
AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine re...    27   7.0  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical ...    26   9.2  
AC006780-5|AAF60646.1|  287|Caenorhabditis elegans Hypothetical ...    26   9.2  
AC006780-4|AAO21411.1|  312|Caenorhabditis elegans Hypothetical ...    26   9.2  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  111 bits (267), Expect = 2e-25
 Identities = 53/76 (69%), Positives = 62/76 (81%)
 Frame = +3

Query: 120 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQH 299
           LNN VLFD+ TY+KLYKEV  YKLITP+VVSERLK+R SLA+  L EL+ KGL+K VV H
Sbjct: 40  LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHH 99

Query: 300 HGQVIYTRATKGDDPV 347
           HGQV+YTRATK  D +
Sbjct: 100 HGQVVYTRATKEADVI 115


>Z99281-17|CAB54456.2|  177|Caenorhabditis elegans Hypothetical
           protein Y57G11C.33 protein.
          Length = 177

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 222 STFQRQQRV*SACTVVLPYTVSHMWVCQTTLGCLTCHGLFLLTTSS 85
           +T  R  R+ +    + P T+      +T LGC TC+  + +T S+
Sbjct: 73  NTIVRINRIFADAEAITPQTIF-----ETVLGCFTCYASYAITKST 113


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 126 NQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KIRGSL 239
           N +LFD+   EKL++++ +  +  P  V E+L ++R +L
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732


>AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine
           receptor, class t protein6 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
 Frame = -2

Query: 232 PRIF-NLSETTAGVISLYCGTSLYSF-SY-----VGLSNNTWLFNLSRTFPFDHFFFLAL 74
           P IF +  ET + ++ + C  +LY + SY     +G S +TWL+   R   F        
Sbjct: 192 PDIFVSHPETVSNIVLVICTGTLYLYLSYNLLFKLGYSTSTWLYKTKRQIIFQAVILCVF 251

Query: 73  PPPDPSFF-FWVFC 35
                  + F +FC
Sbjct: 252 HATVAGLYSFMMFC 265


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 219 LKIRGSLARRALVELRDKGLIKQVVQHHGQVIYTR 323
           L ++GS+ + A +ELR+  +  Q +  H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225


>AC024090-2|AAK67219.1|  658|Caenorhabditis elegans Hypothetical
           protein C52E2.4 protein.
          Length = 658

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 166 YSFSYVGLSNNTWLFNLSRTFPFDHFFFLAL 74
           Y+F  +G++N + L  LS    F+HF  L L
Sbjct: 3   YAFKLLGIANESTLTVLSLRLAFNHFVELRL 33


>AC006780-5|AAF60646.1|  287|Caenorhabditis elegans Hypothetical
           protein Y47D9A.2a protein.
          Length = 287

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 159 KLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVI 314
           +L   +P Y +I       RL +   +A   + E  D+ LI QVVQ H Q++
Sbjct: 235 RLRDHIPFYSIIHQQEGPGRLPLL-EVAPPPVTEPNDEQLITQVVQKHPQLV 285


>AC006780-4|AAO21411.1|  312|Caenorhabditis elegans Hypothetical
           protein Y47D9A.2b protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 159 KLYKEVPQYKLITPAVVSERLKIRGSLARRALVELRDKGLIKQVVQHHGQVI 314
           +L   +P Y +I       RL +   +A   + E  D+ LI QVVQ H Q++
Sbjct: 260 RLRDHIPFYSIIHQQEGPGRLPLL-EVAPPPVTEPNDEQLITQVVQKHPQLV 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,706,800
Number of Sequences: 27780
Number of extensions: 138204
Number of successful extensions: 493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)