Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J12
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   3.4  
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.4  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   7.9  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 400 FYLTSKILSNYEKNCSTVYYNCLFVNTIHLQWNTEI*FELIVFTFL*VNF 251
           FY+    L N         Y CLF++    QW+ +  F L+    L VN+
Sbjct: 460 FYVAFYYLQNIPIQKKYESYRCLFISGTICQWSLKDMFVLVASLTLFVNW 509


>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 533 IMVVVMKQVHFTSNRQFISNSRNMSVCEGSSVAV 432
           I  V +  + F ++      S N+SV EGSS+ +
Sbjct: 73  IYAVCLMNIFFRNSENCFKYSMNLSVAEGSSILI 106


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 423 DFSNRHGATLTNTHIP-GIGDKLSVAGKVNL 512
           +  N+   T T+T    G GDK S AGK N+
Sbjct: 249 NLENKESTTATSTLTDAGFGDKSSTAGKHNV 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,054
Number of Sequences: 5004
Number of extensions: 47636
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)