Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J12
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377...    31   0.87 
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    29   2.7  
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680...    29   3.5  
11_06_0648 + 25873779-25874279,25874418-25875548                       28   4.6  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     28   6.1  
06_01_1112 - 9157776-9158149,9158248-9161158                           27   8.1  
01_01_0759 + 5855467-5855639,5855753-5855815,5855914-5856057,585...    27   8.1  

>04_03_0306 +
           14136338-14136686,14137408-14137442,14137701-14137778,
           14138046-14138124,14138731-14138823,14139472-14139556,
           14140270-14140345,14140669-14140794,14141039-14141137,
           14141238-14141339,14141561-14141671,14141809-14141904,
           14142488-14142539,14142624-14142735,14142879-14142943,
           14144124-14144521,14145236-14145330,14145989-14146015,
           14146081-14146156,14146368-14146421,14146741-14146863,
           14146955-14147023
          Length = 799

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = -2

Query: 444 LRGGC*NQKNVMKFDFI*RLKYYLTMKKTVVLYITIVYL*IPYIY 310
           LRGG  ++KN++        K++LT + ++  Y +I+YL +P  +
Sbjct: 344 LRGGNRDEKNILMAKQFPNSKHFLTYRHSLRSYASILYLRVPSFF 388


>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 555 SRTPSRINHGRCYETGSLYQQQTI 484
           SRTPS ++H   +E+G    QQTI
Sbjct: 16  SRTPSALHHNGAFESGEPSMQQTI 39


>02_03_0172 +
           15965342-15965711,15967757-15967849,15967976-15968060,
           15968749-15968824,15968992-15969120,15969473-15969571,
           15969661-15969762,15970257-15970415,15970507-15970602,
           15971497-15971647,15971782-15971893,15972004-15972074,
           15972548-15972984,15973421-15973492,15973713-15973810,
           15974350-15974425,15975512-15975634,15975776-15975844
          Length = 805

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -2

Query: 444 LRGGC*NQKNVMKFDFI*RLKYYLTMKKTVVLYITIVYL*IPYIY 310
           +RGG  +QKN+         +++ T + ++  Y +I+YL +P ++
Sbjct: 288 IRGGNRDQKNIQLAKQFPNSRHFFTYRHSLQSYASILYLRVPSVF 332


>11_06_0648 + 25873779-25874279,25874418-25875548
          Length = 543

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +3

Query: 30  VPGCAGKRVNLQLILMEPQVLWSRYR*LETKITSSVLLAPLISL 161
           V  C  K    QL++   Q    R+R ++++I S +LL P+ISL
Sbjct: 88  VLSCQDKSAVYQLVMARRQA--DRFRDVQSRIDSYLLLVPVISL 129


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 9   NSRSSGPVPGCAGKRVNLQLILME 80
           N+  SGP+PGC G    LQ ++++
Sbjct: 208 NNSLSGPIPGCIGSLPILQTLVLQ 231


>06_01_1112 - 9157776-9158149,9158248-9161158
          Length = 1094

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 9   NSRSSGPVPGCAGKRVNLQLILME 80
           N+  SGP+PGC G    L+L+ ++
Sbjct: 208 NNSLSGPIPGCIGSLPMLELLELQ 231


>01_01_0759 +
           5855467-5855639,5855753-5855815,5855914-5856057,
           5856146-5856920
          Length = 384

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
 Frame = +3

Query: 129 SSVLLAPL-ISLTKLNWGPLQLD*FTIMCEYS*-----TVNMFAINLKFTYRKVKTISSN 290
           +S+LL PL I L + N  P+ L  FT +  Y+      ++NM+ + LK+T   V + ++N
Sbjct: 45  ASLLLLPLAIVLERRNAPPMSLRLFTKLFLYALLGNTLSLNMYNLGLKYTSPTVASATTN 104

Query: 291 *ISV 302
            I V
Sbjct: 105 SIPV 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,234
Number of Sequences: 37544
Number of extensions: 285923
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)