Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J06
         (470 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6Q305 Cluster: RNA-dependent RNA polymerase; n=1; Euro...    33   2.4  
UniRef50_A4VEY3 Cluster: Putative uncharacterized protein; n=1; ...    33   4.2  
UniRef50_A3BP27 Cluster: Putative uncharacterized protein; n=3; ...    32   7.3  

>UniRef50_Q6Q305 Cluster: RNA-dependent RNA polymerase; n=1;
           European mountain ash ringspot-associated virus|Rep:
           RNA-dependent RNA polymerase - European mountain ash
           ringspot-associated virus
          Length = 2293

 Score = 33.5 bits (73), Expect = 2.4
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +2

Query: 275 RRAKEYCRSNTRHRIKYLFGENEFKMAINCSGFRKKHYDVKSRNRVVMISAHNCDSGQMF 454
           +R KEY R+ T  R   +F ++  +  ++  G +++HY + S+ + V    + C +   F
Sbjct: 10  QRRKEYLRAETEIRNNNVFEKDILQKFLHIVGKKQRHYTISSKKKEVQDIFNKCSTNPGF 69

Query: 455 S 457
           +
Sbjct: 70  T 70


>UniRef50_A4VEY3 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1517

 Score = 32.7 bits (71), Expect = 4.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 230  ENYFLDAANELIRADRRAKEYCRSNTRHRIKYLFGENEFKMAI 358
            +N F    N     D+  KE   +NT +R+KYL  EN  K +I
Sbjct: 1342 QNKFASQQNNFTGQDKLIKEMLNNNTLNRLKYLKNENNKKNSI 1384


>UniRef50_A3BP27 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 414

 Score = 31.9 bits (69), Expect = 7.3
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +2

Query: 128 SVPRMY-RLLSLAVILVAVEACRPPPCHWSDGRPIENYFLDAANELIRADRRAKEYCRSN 304
           S PR+Y   +    ++  +E+    P HW  G    NYF  A  +L    R    Y  +N
Sbjct: 269 SKPRVYIGCMKSGPVVDKIESKYYEPDHWKFGTEGNNYFRHATRQLYAVTRDLATYISAN 328

Query: 305 TRHRIKYLFGENEFKMAINCSGFRKKHYDVKS 400
            RH I + +   +        G   +H D +S
Sbjct: 329 -RH-ILHKYSNEDVSFGSWLIGLDVEHVDERS 358


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,261,499
Number of Sequences: 1657284
Number of extensions: 8823238
Number of successful extensions: 21374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21371
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)