Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J06
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    27   1.1  
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    27   1.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   4.4  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   5.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   5.8  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   5.8  

>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = -2

Query: 436 AVVSADHHHPIPGLHIVMFLPETGTVYRHF---EFILTEEVLYA 314
           AV+   HHHP P   I    P    + R     +FI  E+  YA
Sbjct: 235 AVIGFYHHHPFPSSEIARCFPRRRAILRSVLGADFIGFEDYSYA 278


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 209 WSDGRPIENYFLDAANELIRADRRAKEYCRSNTRHRIKYLFGE 337
           W   R    Y     + ++R ++  +EY R N R+R K   GE
Sbjct: 35  WETARVELEYSSIQLDSVLRYEKAVQEYIRLNRRYRNKIASGE 77


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 228  LRTIS*MPQMSLSEQTDVRRNTAVVTLGI 314
            L  I  + QM+ S+Q DV+ N   V LG+
Sbjct: 1024 LEEIKNLEQMAYSKQHDVKSNPVAVELGL 1052


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 74  LIIAYKQYNGDDNKDDFNSVPRMYRLLSLAVIL 172
           +I AY+      NKDDF ++P    L  LA IL
Sbjct: 129 VITAYEVAKLGKNKDDFITIPHTTSLGRLAEIL 161


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 361  VYRHFEFILTEEVLYAMPSVTTAVF 287
            +  HF+FIL  E     P   TAV+
Sbjct: 1355 ILEHFDFILDTEAASTFPKSITAVY 1379


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 251 ANELIRADRRAKEYCRSNTRHRIKYLFGENEFKMA 355
           AN LI   +   +    +  H+IK L  ENE K++
Sbjct: 289 ANSLIMEYKNELQSAEEHFSHKIKELTSENELKIS 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,032
Number of Sequences: 5004
Number of extensions: 36191
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)