Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J06
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68748-5|CAA92956.2|  446|Caenorhabditis elegans Hypothetical pr...    30   0.96 
U64844-11|AAB18311.1|  482|Caenorhabditis elegans Hypothetical p...    29   2.2  

>Z68748-5|CAA92956.2|  446|Caenorhabditis elegans Hypothetical
           protein F13H10.5 protein.
          Length = 446

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -2

Query: 415 HHPIPGLHIVMFLPETGTVYRHFEF----ILTEEVLYAMP 308
           H+PIP +H+    P++G +  H+ F    I+ + VL A P
Sbjct: 285 HNPIPNVHVYYTTPKSGNLPDHYHFKKSDIVADLVLLADP 324


>U64844-11|AAB18311.1|  482|Caenorhabditis elegans Hypothetical
           protein T22F3.8 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -2

Query: 310 PSVTTAVFLRTSVCSDKLICGI*EIVLNRSTVTPMAWRWSACLH 179
           P   TA+F+    C + +   I  +      V+ + W+WS  LH
Sbjct: 177 PLAETAIFVAVLTCFNAIASMITNMATGLICVSSLGWKWSYYLH 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,259
Number of Sequences: 27780
Number of extensions: 220540
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)