Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J04
         (239 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        30   0.047
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   0.58 
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   1.0  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   1.3  
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...    24   2.3  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    24   3.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    24   3.1  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    23   4.1  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    23   5.4  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    22   9.4  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    22   9.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    22   9.4  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    22   9.4  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 29.9 bits (64), Expect = 0.047
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 100 CIKYSVCIGTLALLLFINLYRMSTFLL 20
           C  YS+C+  +ALLLF  LY   +  L
Sbjct: 70  CYHYSLCLSLVALLLFYTLYPFQSITL 96


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 96  IQRVLFREACPLVAEVQANQHLFSVT 173
           +QRVLF+   P +AE+  ++++  +T
Sbjct: 878 LQRVLFKNVVPYIAELGISKYILDLT 903


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 6   CIELINRNVLILYKLINNKSANVPIQTEYLIQRV 107
           C +L+ R  +++ KL N+K+    +  + LIQ V
Sbjct: 214 CPQLVQRLAILIRKLWNHKAFKSHVSPQELIQEV 247


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 36  ILYKLINNKSANVPIQTEYLIQRV-LFREAC 125
           ILY+L NNKSANV  Q   L+  + +  +AC
Sbjct: 820 ILYRL-NNKSANVREQAADLVSSITIVLKAC 849


>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = +3

Query: 78  IQTEYLIQRVLFREACPLVAEVQANQHLFSVTSKTCSRF*YRLRSGL 218
           ++T+ L  R  F+E   LVAEVQ      SV+  T S    +LR+G+
Sbjct: 155 LETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSLKYGKLRNGV 201


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -2

Query: 229 LGQCKPE-----RSLY*KREQVLEVTLKRCWFAWTSATRGHASL 113
           +G+C+ +     R LY K + V+++  KRC   WT A  G   L
Sbjct: 651 IGECRKKTMGMFRLLYGKAD-VIKMLAKRCNEKWTIAPTGEIGL 693


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 124 HASLKRTLCIKYSVCIGTLALLLFIN 47
           H SL+ +L  KY +CI   AL   IN
Sbjct: 758 HKSLEASLYEKYDLCITGRALSQIIN 783


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 148 RTNIFLVLLLKLAHVFSTDFARAYIAQ 228
           R+ +   LLL L   FS DFA +++A+
Sbjct: 529 RSVLVTSLLLSLKPAFSIDFAASWLAK 555


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 61  LLFINLYRMSTFLLISSIHI 2
           LLF+N Y+M   +++  IH+
Sbjct: 517 LLFMNSYKMKLSIILGVIHM 536


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 3   ICIELINRNVLILYKLINNKSANVPIQTEYLIQRVLFREAC 125
           I I ++  N  IL +    K +   I+ + L+QR     AC
Sbjct: 23  ILIGILRHNATILLQSSPKKLSKEEIREQRLLQRAYALRAC 63


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +3

Query: 30  VLILYKLINNKSANVPIQTEYLIQRVL 110
           +L+   L+N+KS N+  ++  +++R+L
Sbjct: 247 ILLENPLLNSKSKNIVNKSSSILKRIL 273


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 169 LLLKLAHVFSTDFARAYI 222
           LL+   HV STD+ R ++
Sbjct: 363 LLVATRHVLSTDYLRGFL 380


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 164 KKMLVRLDLCH*RTRLPKENPLY*VFGLY 78
           K +L + D      R+PKE   Y  FGLY
Sbjct: 326 KMVLDQADFLMKYLRIPKEGLYYRNFGLY 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 929,847
Number of Sequences: 5004
Number of extensions: 15434
Number of successful extensions: 33
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)