Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J04
         (239 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415...    29   0.52 
11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636     26   4.9  
01_06_1148 - 34895562-34895690,34896339-34896464,34896579-348969...    25   6.5  
04_01_0221 + 2795975-2796836,2797001-2797517,2797967-2798516           25   8.5  

>05_04_0091 +
           17839118-17839303,17840876-17840923,17841381-17841526,
           17841616-17841664,17842260-17842316,17842460-17842627,
           17842950-17843011,17843103-17843190,17843277-17843388,
           17843472-17843548,17843622-17843759,17844424-17844588,
           17844667-17844780,17845026-17845122,17845242-17845390
          Length = 551

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 12  ELINRNVLILYKLINNKSANVPIQTEYLIQRVLFREACPLVAEVQANQH 158
           E+I   V  +Y  I+ +  N P++T  L Q+    EAC  ++E+  N H
Sbjct: 121 EIIQPLVFKIYD-IDTRYHNTPVKTLNLAQQDFLGEACCNLSEIVTNNH 168


>11_06_0739 + 26814463-26814809,26814891-26815217,26815458-26817636
          Length = 950

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +3

Query: 15  LINRNVLILYKLINNKSANVPIQTEYLIQRVLFREACPLVAEVQANQ 155
           LIN N L+  KLI +K  N+ I+ E L+     R  C +V  V   Q
Sbjct: 762 LINLNRLLYLKLIADKLENLEIKHEALLS---LRRLCFVVKSVALAQ 805


>01_06_1148 -
           34895562-34895690,34896339-34896464,34896579-34896906,
           34897127-34897216,34897284-34897360,34897519-34897593,
           34897862-34897980,34899240-34899363,34899427-34899477,
           34899590-34899688,34900104-34900214
          Length = 442

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +3

Query: 15  LINRNVLILYKLINNKSANVPIQTEY 92
           +IN+ ++ +Y LIN+K   + I+ ++
Sbjct: 414 IINKRIIEMYDLINSKRGQIQIEFQW 439


>04_01_0221 + 2795975-2796836,2797001-2797517,2797967-2798516
          Length = 642

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 100 KGFSLGRRVL*WQRSKRTNIFLV 168
           KG S+   V+ W+R K T++FLV
Sbjct: 413 KGSSIIDFVMCWRRQKNTDLFLV 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,500,236
Number of Sequences: 37544
Number of extensions: 89089
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)