Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J04
         (239 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   0.40 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   4.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   4.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   6.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   8.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   8.5  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 0.40
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 116 PKENPLY*VFGLYWNIGTFIVY 51
           P  N     F +YWN+ TF+ +
Sbjct: 34  PDNNKTVREFNVYWNVPTFMCH 55


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 112 KRTLCIKYSVCIGTLA 65
           K T  ++Y+  IGTLA
Sbjct: 163 KNTSAVRYTHYIGTLA 178


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 33  LILYKLINNKSANVPIQTEYLIQRVLFREACPLVAEVQANQHLFS 167
           L++ ++I   S  VP+  +YLI  ++       V  V  N H  S
Sbjct: 291 LLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRS 335


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 33  LILYKLINNKSANVPIQTEYLIQRVLFREACPLVAEVQANQHLFS 167
           L++ ++I   S  VP+  +YLI  ++       V  V  N H  S
Sbjct: 291 LLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRS 335


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.4 bits (38), Expect = 6.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 151 FAWTSATRGHASLKRTLCIKYSVCIGTLAL 62
           +AW  A R   S    LC K+ +   +L L
Sbjct: 483 YAWIGAGRDSDSRLLDLCTKFLMHKDSLGL 512


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 185 LTFLVQTSLGLT 220
           LT  VQTS+G+T
Sbjct: 812 LTAAVQTSVGVT 823


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 185 LTFLVQTSLGLT 220
           LT  VQTS+G+T
Sbjct: 902 LTAAVQTSVGVT 913


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,712
Number of Sequences: 438
Number of extensions: 955
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)