Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J02
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   2.2  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    26   2.2  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   2.9  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   5.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   6.8  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +2

Query: 203 YHAVCPTTRRQES*TPSLPSTRTKPLPENVNVHS 304
           +    PTT   E   P  PS  T+P P  V   S
Sbjct: 341 FSPAAPTTVSSERNAPPYPSAPTRPTPPTVQTSS 374


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 54  PSNRRRRRKHSPL*SAVPXNNSKEIL 131
           PSNR+R+RKH  L S +   N + +L
Sbjct: 71  PSNRKRKRKHGFL-SRIRSVNGRRVL 95


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 275 PLPENVNVHSYFVTAHEVLSSCSLSN 352
           PLPE + VHS++ T ++V  S SL N
Sbjct: 309 PLPEKILVHSHW-TMNKVKMSKSLGN 333


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 359 RIGLIGCSWIRPHV 318
           ++ L  C+W+RPHV
Sbjct: 911 KLVLAACTWLRPHV 924


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -2

Query: 217 TNGVIRHLPINISVCALTMTSAGLYLRHS 131
           TN  I H   N S   L M    LY+ HS
Sbjct: 845 TNNPIVHYSANYSDTLLIMQDGDLYINHS 873


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,558,027
Number of Sequences: 5004
Number of extensions: 29574
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)