Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_J02
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572...    29   1.6  
01_06_1714 - 39368509-39369153,39369607-39369850,39369995-393701...    27   4.8  
01_06_1181 - 35169729-35169768,35169927-35169994,35170051-35171265     27   6.3  

>01_06_0707 +
           31355929-31356244,31356766-31356992,31357081-31357257,
           31357355-31357510,31357778-31358054,31358192-31358306,
           31360349-31360634,31361196-31361381,31361663-31361833,
           31362307-31362426
          Length = 676

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +3

Query: 48  VTPSNRRRRRKHSPL*SAVPXNNSKEILECLKYR-PAEVIVNAQTEML----IGRCLITP 212
           V  S ++R +K     S  P    +E  + L+ R P  +I +A   ML    +GR L T 
Sbjct: 586 VAVSGKKRSQKLYRRHSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRRLFTH 645

Query: 213 FVQQRGARSPERLPYQVPVPSRYRK 287
               +GA  P      VP+P + ++
Sbjct: 646 LKVYKGAEHPHEAQKPVPLPIKDKR 670


>01_06_1714 -
           39368509-39369153,39369607-39369850,39369995-39370191,
           39370607-39370708,39370826-39371026,39371138-39371381,
           39371813-39371983,39372450-39372751
          Length = 701

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   VQQRDCFQWIRLHIMESLRQTGAEGENTRLYS 96
           V+  D F W  + ++ SLR+ G  G  TRL S
Sbjct: 38  VECGDYFDWQAVGLLHSLRKAGQPGGVTRLLS 69


>01_06_1181 - 35169729-35169768,35169927-35169994,35170051-35171265
          Length = 440

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 194 KVPYHAVCPTTRRQES*TPSLPSTRTKPLPENVNVHSYFVTAHEVLSSCS 343
           KV    V PT R +     S     ++    ++ VH + V+ HE +S CS
Sbjct: 25  KVRSVGVAPTVREKPKADGSATGESSEDGGAHLKVHPHHVSDHESVSECS 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,685,987
Number of Sequences: 37544
Number of extensions: 213773
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)