Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_J01
(375 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 33 0.019
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 28 0.55
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 2.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 3.9
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 25 5.1
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 5.1
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 5.1
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 25 5.1
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 5.1
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 24 6.8
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 24 6.8
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 9.0
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 32.7 bits (71), Expect = 0.019
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 21 MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 155
MFGK+ LL+ A + +Q + + P+ ++H E ELL ++RV
Sbjct: 1 MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 0.55
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 22 CSGRSSFYCLSLCASAFKAD 81
C G SSFYCLS+ +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 2.2
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -3
Query: 319 VPLPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSELSVRAPCASLRTL-EL 143
+P+ A AAP + PIA + +PA L PA P AP A + ++ EL
Sbjct: 439 LPMGAPAAPP----LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAEL 494
Query: 142 VNSSG 128
G
Sbjct: 495 PQQDG 499
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 3.9
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -3
Query: 322 PVPLPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSELSVRAP 170
PVP P+VAAP + V S P ++ P + AP VP SV AP
Sbjct: 1122 PVPKPSVAAPP--VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP-SVAAP 1169
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 5.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 12 YTNMFGKIVFLLLVALCVGVQSRYLIVSEPVYYI 113
+T++FG IVFL + + R +E VY I
Sbjct: 93 WTHLFGAIVFLFFIFKSELILKRDTTTAEDVYVI 126
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 5.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 238 SLPAKGTLTPAPEVPSELSVRAPCASLRTLELVNS 134
S+P G P VP + S +A SLRT ++ S
Sbjct: 210 SIPKVGETYNDPSVPKDFSRKAIHESLRTKNILQS 244
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 24.6 bits (51), Expect = 5.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 238 SLPAKGTLTPAPEVPSE 188
SLPA GT TP+P V +
Sbjct: 725 SLPAAGTATPSPVVSQQ 741
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 24.6 bits (51), Expect = 5.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 310 EVALDNVNGHGVSLTDTHIPG 372
+ A+DN+ G SL H+PG
Sbjct: 179 KAAIDNLVSIGASLAHVHVPG 199
Score = 24.2 bits (50), Expect = 6.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 150 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNR 284
R+ RD + N DGTSGA + F G K + + S D++++
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISSK 487
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 24.6 bits (51), Expect = 5.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -3
Query: 319 VPLPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLEL 143
V P + APS S ++ + ++ P + T +P+P + S S +P SLR L
Sbjct: 297 VDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESL 356
Query: 142 VNSSGSS 122
S S
Sbjct: 357 GIKSAKS 363
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 24.2 bits (50), Expect = 6.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 364 CVYP*DLLRGRLHYPVPLPAVAAPSFCLLVKS 269
C++ D L + Y + L AV A +FC KS
Sbjct: 314 CIFDIDSLENKKFYWIHLAAVKALAFCPWQKS 345
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 24.2 bits (50), Expect = 6.8
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 189 SDGTSGAGVKVPFAGNDKNIVSAIGSLDLTNRQ 287
SDGTS V V GN I S+ G +D+ N Q
Sbjct: 442 SDGTSVRSVCVSCCGNFGLIGSSKGVVDVYNMQ 474
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 23.8 bits (49), Expect = 9.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +3
Query: 36 VFLLLVALCVGVQSRYLIVSEPVYYI 113
+F++L+ LC + S ++V +Y+I
Sbjct: 639 MFIMLICLCYSIISPLILVFGLIYFI 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,648
Number of Sequences: 5004
Number of extensions: 25976
Number of successful extensions: 87
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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