Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_J01
(375 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632... 31 0.29
07_03_1775 + 29431106-29431193,29431290-29431329,29431620-294320... 28 2.7
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 27 4.8
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 27 4.8
06_03_0998 - 26742608-26742802,26743137-26743325,26743600-267436... 27 6.3
06_01_0889 - 6807449-6809257 27 6.3
04_04_0412 + 25023758-25023826,25023927-25023991,25024082-250241... 27 6.3
11_06_0759 + 27008772-27009571,27010457-27010576,27011683-270119... 26 8.4
11_06_0610 - 25449085-25453284 26 8.4
>01_07_0187 +
41862342-41862622,41862730-41862912,41863236-41863299,
41863547-41863756,41863850-41864035,41864180-41864478,
41864584-41864731,41864798-41864863,41864945-41865217,
41865523-41865741,41865864-41866013
Length = 692
Score = 31.1 bits (67), Expect = 0.29
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 287 ETRRCNRWKWHW 322
ETRRCN WKW W
Sbjct: 261 ETRRCNFWKWIW 272
>07_03_1775 +
29431106-29431193,29431290-29431329,29431620-29432080,
29432173-29432363,29432503-29432635,29432839-29433428
Length = 500
Score = 27.9 bits (59), Expect = 2.7
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -3
Query: 328 HYPVPLPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSELSV 179
H P P PA + F KS P A+TI +S P+ TP P+ S +V
Sbjct: 92 HTPAPSPAPSPSPFTAPPKSASPAAITIPIS-PS----TPQPKAESNPAV 136
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +3
Query: 96 EPVY--YIQHYE---EPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGND 239
EP Y + HY PEL+ R DA G + L D G +P G D
Sbjct: 157 EPFYGTKVSHYPPCPRPELVDGLRAHTDAGGLILLFQDDRFGGLQMIPNRGGD 209
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 238 SLPAKGTLTPAPEVPSELSVRAP 170
S+P + +L PAP S+L V AP
Sbjct: 870 SIPVQNSLPPAPPSASQLQVHAP 892
>06_03_0998 -
26742608-26742802,26743137-26743325,26743600-26743657,
26743990-26744056,26744368-26746504
Length = 881
Score = 26.6 bits (56), Expect = 6.3
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -3
Query: 331 LHYPVPLPAVAAPSFCLLVKSKEPIALTIFLSLPA--KGTLTPAPEVPSELSVRAPCASL 158
LH P P P AP+ ++ + + L LP+ KG P P +P L+ + ++L
Sbjct: 77 LHSPPPEPPPLAPAAAAAAEAISSPSSHLRLLLPSRVKGRPLPVPTLPLRLATLSAASAL 136
>06_01_0889 - 6807449-6809257
Length = 602
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 328 HYPVPLPAVAAPSFCLLVKSKEPIALTIFLSLP 230
H+P P PA+ P F L L + LSLP
Sbjct: 63 HHPDPRPALLNPLFASLPPRAAASLLALMLSLP 95
>04_04_0412 +
25023758-25023826,25023927-25023991,25024082-25024145,
25024806-25024940,25025029-25025160,25025470-25025553,
25025638-25025736,25025992-25026083,25026280-25026352,
25026476-25026628,25026721-25026840,25026926-25026979,
25027188-25027271,25027431-25027505,25027585-25027728,
25028016-25028123,25028340-25028459,25028909-25029102,
25029193-25029319
Length = 663
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 364 CVYP*D-LLRGRLHYPVPLPAVAAPSFCLLVK 272
C YP D L+ + +P+PL +FCL K
Sbjct: 450 CAYPSDKLVAADVDHPMPLSVTGLETFCLSYK 481
>11_06_0759 +
27008772-27009571,27010457-27010576,27011683-27011957,
27012516-27013783
Length = 820
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 195 GTSG--AGVKVPFAGNDKNIVSAIGSLDLT 278
G SG GVK P GN + +GS+D T
Sbjct: 531 GQSGFHGGVKFPVGGNPSKSLKVLGSIDST 560
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -3
Query: 322 PVPLPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSELSVRAP 170
P P P ++ P VKS P A I P K PAP + V++P
Sbjct: 1169 PPPAPVISPPP---PVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPVKSP 1216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,658,591
Number of Sequences: 37544
Number of extensions: 175335
Number of successful extensions: 622
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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